Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16320 | 3' | -57.6 | NC_004084.1 | + | 9687 | 0.68 | 0.534362 |
Target: 5'- gGGUGGCcCgCCGGAGAccgcggugaguuGGcCGACGCCg -3' miRNA: 3'- gCCGCUGcG-GGCCUUU------------CCuGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 9500 | 0.66 | 0.649942 |
Target: 5'- cCGGCGcCGaCCGGAAGu--CGugGCCg -3' miRNA: 3'- -GCCGCuGCgGGCCUUUccuGCugUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8964 | 0.67 | 0.586415 |
Target: 5'- gCGGCGACGaagaCGGc-GGGACGAgGgCa -3' miRNA: 3'- -GCCGCUGCgg--GCCuuUCCUGCUgUgG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8654 | 0.69 | 0.493928 |
Target: 5'- -cGCGAUGCCCgaaguacgggGGAGAuGuGACGACGCa -3' miRNA: 3'- gcCGCUGCGGG----------CCUUU-C-CUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8347 | 0.67 | 0.574855 |
Target: 5'- cCGGCGuuuuCGagagcaaucgccaCCCGGuGAGGGACGAgCAUCu -3' miRNA: 3'- -GCCGCu---GC-------------GGGCC-UUUCCUGCU-GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8239 | 0.67 | 0.586415 |
Target: 5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3' miRNA: 3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 7592 | 0.69 | 0.483052 |
Target: 5'- aGGCagguugugccGGCGCCCGcGAAcggguccAGGACGAUuCCc -3' miRNA: 3'- gCCG----------CUGCGGGC-CUU-------UCCUGCUGuGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 7512 | 0.67 | 0.585362 |
Target: 5'- aCGGgGagacuGCGCCCGagugggugcagccGAuccAGGACGGCAUCg -3' miRNA: 3'- -GCCgC-----UGCGGGC-------------CUu--UCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 7429 | 0.68 | 0.524134 |
Target: 5'- gGGCGAUGCCgaCGGu--GG-CGAgACCu -3' miRNA: 3'- gCCGCUGCGG--GCCuuuCCuGCUgUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 6716 | 0.71 | 0.3572 |
Target: 5'- cCGGCGAugucCGUCCGGuacGGGaACGACGuCCc -3' miRNA: 3'- -GCCGCU----GCGGGCCuu-UCC-UGCUGU-GG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 6439 | 0.68 | 0.544658 |
Target: 5'- uGGUG-CGCCCGaGGAGGGugcUGGCgGCCu -3' miRNA: 3'- gCCGCuGCGGGC-CUUUCCu--GCUG-UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 4947 | 0.66 | 0.628733 |
Target: 5'- uGGaUGACGUCCGccGGGaGACGACgACCc -3' miRNA: 3'- gCC-GCUGCGGGCcuUUC-CUGCUG-UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1865 | 0.66 | 0.632976 |
Target: 5'- aCGGaCGACGucgccuCCUGGAcugccacgccaagucGGGGAUGGgGCCg -3' miRNA: 3'- -GCC-GCUGC------GGGCCU---------------UUCCUGCUgUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1807 | 0.7 | 0.436095 |
Target: 5'- cCGGCGAacuCGCcgaCCGGc---GACGACGCCg -3' miRNA: 3'- -GCCGCU---GCG---GGCCuuucCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1767 | 0.66 | 0.639341 |
Target: 5'- cCGaGCGGgGCCUGGcGAGGugGucguucugaGCCa -3' miRNA: 3'- -GC-CGCUgCGGGCCuUUCCugCug-------UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1551 | 0.71 | 0.359663 |
Target: 5'- aGGCGACggccgucgagccggaGCCCGcGAAcggguccAGGACGACgucGCCc -3' miRNA: 3'- gCCGCUG---------------CGGGC-CUU-------UCCUGCUG---UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1284 | 0.66 | 0.675306 |
Target: 5'- cCGGgGAUGCCCGGcucgcucgaugagugAuAGGAucucagcaCGGCGCUc -3' miRNA: 3'- -GCCgCUGCGGGCC---------------UuUCCU--------GCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1242 | 0.68 | 0.54776 |
Target: 5'- gGGCGaucGCGCCCaucuccucauccuGGACGACAUCa -3' miRNA: 3'- gCCGC---UGCGGGccuuu--------CCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1018 | 0.68 | 0.524134 |
Target: 5'- cCGGCGACGUCgaCGcGAucGGGGGCG-CGCUc -3' miRNA: 3'- -GCCGCUGCGG--GC-CU--UUCCUGCuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 938 | 0.68 | 0.503912 |
Target: 5'- uGGUGACGCucCCGGAGgAGGuCGcGgGCCa -3' miRNA: 3'- gCCGCUGCG--GGCCUU-UCCuGC-UgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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