miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 58041 0.7 0.408678
Target:  5'- gCGGCGACGucCCCGGGcuc-GCGGCACa -3'
miRNA:   3'- -GCCGCUGC--GGGCCUuuccUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 40901 0.72 0.333222
Target:  5'- gCGGCGACG-CUGGAGgccuGGACGAggagcagcUACCg -3'
miRNA:   3'- -GCCGCUGCgGGCCUUu---CCUGCU--------GUGG- -5'
16320 3' -57.6 NC_004084.1 + 43180 0.71 0.349074
Target:  5'- aCGGaGuCGCCCGaGGAGguGGACGAUGCCc -3'
miRNA:   3'- -GCCgCuGCGGGC-CUUU--CCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 44229 0.71 0.356381
Target:  5'- uGGcCGACGgCUGGGAgcucgucuacgacGGGACGACcgGCCu -3'
miRNA:   3'- gCC-GCUGCgGGCCUU-------------UCCUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 43958 0.71 0.364625
Target:  5'- aGGCG--GCCUGGGAGGGcgagggaACGACGCUc -3'
miRNA:   3'- gCCGCugCGGGCCUUUCC-------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 43806 0.71 0.364625
Target:  5'- gCGGCGaggaGCGCCgGGAGauggaucauucguGGGcgcgagacauccGCGACGCCg -3'
miRNA:   3'- -GCCGC----UGCGGgCCUU-------------UCC------------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 17168 0.71 0.391008
Target:  5'- cCGGCGACGUCgaaGGcGAGGGaGGCACa -3'
miRNA:   3'- -GCCGCUGCGGg--CCuUUCCUgCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 17270 0.7 0.399781
Target:  5'- uCGGCGAUGCCCucgguGGAGgcGGuGGCGGCGgUg -3'
miRNA:   3'- -GCCGCUGCGGG-----CCUU--UC-CUGCUGUgG- -5'
16320 3' -57.6 NC_004084.1 + 53317 0.7 0.408678
Target:  5'- cCGGCGAUcgcggGCUCGGuucacgucuucGAGGugGACugCg -3'
miRNA:   3'- -GCCGCUG-----CGGGCCu----------UUCCugCUGugG- -5'
16320 3' -57.6 NC_004084.1 + 55971 0.72 0.317904
Target:  5'- aCGGCGACGC--GGAGGGGcUGAuCGCCg -3'
miRNA:   3'- -GCCGCUGCGggCCUUUCCuGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 31449 0.72 0.317904
Target:  5'- gGGUGACuGCCCuc-GAGGACGGCAgCa -3'
miRNA:   3'- gCCGCUG-CGGGccuUUCCUGCUGUgG- -5'
16320 3' -57.6 NC_004084.1 + 29363 0.73 0.296644
Target:  5'- uGGuCGACGCCCGGGAucccgcgucccuccuGGAaggUGAUGCCg -3'
miRNA:   3'- gCC-GCUGCGGGCCUUu--------------CCU---GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 57002 0.77 0.144865
Target:  5'- aCGGCGACG-CCGaGAAuGG-CGACGCCg -3'
miRNA:   3'- -GCCGCUGCgGGC-CUUuCCuGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 17662 0.76 0.193387
Target:  5'- gGGCGACaCCCGaGcacAGGGCGACGCUg -3'
miRNA:   3'- gCCGCUGcGGGC-Cuu-UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 52591 0.75 0.203613
Target:  5'- gCGGCGugGUCCGGugggucGAGGcaguCGACACg -3'
miRNA:   3'- -GCCGCugCGGGCCu-----UUCCu---GCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 41760 0.74 0.230079
Target:  5'- cCGGCGACGaggaccuCCCGGAcgacgucgacgacGAGGGCGuCACg -3'
miRNA:   3'- -GCCGCUGC-------GGGCCU-------------UUCCUGCuGUGg -5'
16320 3' -57.6 NC_004084.1 + 51405 0.73 0.261967
Target:  5'- gCGGcCGACGCCgucgaGGccuucGAGGGCGACACg -3'
miRNA:   3'- -GCC-GCUGCGGg----CCu----UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 30424 0.73 0.261967
Target:  5'- gGGCGGCGa-CGGAagcgauggcGAGGACGACGuCCc -3'
miRNA:   3'- gCCGCUGCggGCCU---------UUCCUGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 42791 0.73 0.261967
Target:  5'- aCGGUGACGagUGGAAGuucaacccGGugGACGCCg -3'
miRNA:   3'- -GCCGCUGCggGCCUUU--------CCugCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 21218 0.73 0.295931
Target:  5'- uCGGCGGCGaagCCGGu---GACGACAUCg -3'
miRNA:   3'- -GCCGCUGCg--GGCCuuucCUGCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.