Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16320 | 3' | -57.6 | NC_004084.1 | + | 51405 | 0.73 | 0.261967 |
Target: 5'- gCGGcCGACGCCgucgaGGccuucGAGGGCGACACg -3' miRNA: 3'- -GCC-GCUGCGGg----CCu----UUCCUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 41760 | 0.74 | 0.230079 |
Target: 5'- cCGGCGACGaggaccuCCCGGAcgacgucgacgacGAGGGCGuCACg -3' miRNA: 3'- -GCCGCUGC-------GGGCCU-------------UUCCUGCuGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 52591 | 0.75 | 0.203613 |
Target: 5'- gCGGCGugGUCCGGugggucGAGGcaguCGACACg -3' miRNA: 3'- -GCCGCugCGGGCCu-----UUCCu---GCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 17662 | 0.76 | 0.193387 |
Target: 5'- gGGCGACaCCCGaGcacAGGGCGACGCUg -3' miRNA: 3'- gCCGCUGcGGGC-Cuu-UCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 57002 | 0.77 | 0.144865 |
Target: 5'- aCGGCGACG-CCGaGAAuGG-CGACGCCg -3' miRNA: 3'- -GCCGCUGCgGGC-CUUuCCuGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 44229 | 0.71 | 0.356381 |
Target: 5'- uGGcCGACGgCUGGGAgcucgucuacgacGGGACGACcgGCCu -3' miRNA: 3'- gCC-GCUGCgGGCCUU-------------UCCUGCUG--UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 43958 | 0.71 | 0.364625 |
Target: 5'- aGGCG--GCCUGGGAGGGcgagggaACGACGCUc -3' miRNA: 3'- gCCGCugCGGGCCUUUCC-------UGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 41628 | 0.69 | 0.484036 |
Target: 5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3' miRNA: 3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 437 | 0.69 | 0.474239 |
Target: 5'- aCGGCGAC-CUCGaGAcggcGGAgGACGCCc -3' miRNA: 3'- -GCCGCUGcGGGC-CUuu--CCUgCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 19497 | 0.69 | 0.474239 |
Target: 5'- aGGCGAgcaggaGCCCGGGA---GCGaACGCCg -3' miRNA: 3'- gCCGCUg-----CGGGCCUUuccUGC-UGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 29540 | 0.69 | 0.47132 |
Target: 5'- cCGGUGACGCgCCGGAgcGuaagcaggccguugAGGGCcauCGCCg -3' miRNA: 3'- -GCCGCUGCG-GGCCU--U--------------UCCUGcu-GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 39354 | 0.69 | 0.454951 |
Target: 5'- --cCGAaccUGCCCGuucguGAGGACGACGCCg -3' miRNA: 3'- gccGCU---GCGGGCcu---UUCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 19574 | 0.69 | 0.445467 |
Target: 5'- aGGaCGACGuCCCaGAccacGAGGACGACGa- -3' miRNA: 3'- gCC-GCUGC-GGGcCU----UUCCUGCUGUgg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1807 | 0.7 | 0.436095 |
Target: 5'- cCGGCGAacuCGCcgaCCGGc---GACGACGCCg -3' miRNA: 3'- -GCCGCU---GCG---GGCCuuucCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49038 | 0.7 | 0.436095 |
Target: 5'- uGGgGAUGCCCGaGGAGGGCaAC-CCg -3' miRNA: 3'- gCCgCUGCGGGCcUUUCCUGcUGuGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 58041 | 0.7 | 0.408678 |
Target: 5'- gCGGCGACGucCCCGGGcuc-GCGGCACa -3' miRNA: 3'- -GCCGCUGC--GGGCCUuuccUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 53317 | 0.7 | 0.408678 |
Target: 5'- cCGGCGAUcgcggGCUCGGuucacgucuucGAGGugGACugCg -3' miRNA: 3'- -GCCGCUG-----CGGGCCu----------UUCCugCUGugG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 17270 | 0.7 | 0.399781 |
Target: 5'- uCGGCGAUGCCCucgguGGAGgcGGuGGCGGCGgUg -3' miRNA: 3'- -GCCGCUGCGGG-----CCUU--UC-CUGCUGUgG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 17168 | 0.71 | 0.391008 |
Target: 5'- cCGGCGACGUCgaaGGcGAGGGaGGCACa -3' miRNA: 3'- -GCCGCUGCGGg--CCuUUCCUgCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 43806 | 0.71 | 0.364625 |
Target: 5'- gCGGCGaggaGCGCCgGGAGauggaucauucguGGGcgcgagacauccGCGACGCCg -3' miRNA: 3'- -GCCGC----UGCGGgCCUU-------------UCC------------UGCUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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