miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 17270 0.7 0.399781
Target:  5'- uCGGCGAUGCCCucgguGGAGgcGGuGGCGGCGgUg -3'
miRNA:   3'- -GCCGCUGCGGG-----CCUU--UC-CUGCUGUgG- -5'
16320 3' -57.6 NC_004084.1 + 53317 0.7 0.408678
Target:  5'- cCGGCGAUcgcggGCUCGGuucacgucuucGAGGugGACugCg -3'
miRNA:   3'- -GCCGCUG-----CGGGCCu----------UUCCugCUGugG- -5'
16320 3' -57.6 NC_004084.1 + 58041 0.7 0.408678
Target:  5'- gCGGCGACGucCCCGGGcuc-GCGGCACa -3'
miRNA:   3'- -GCCGCUGC--GGGCCUuuccUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 49038 0.7 0.436095
Target:  5'- uGGgGAUGCCCGaGGAGGGCaAC-CCg -3'
miRNA:   3'- gCCgCUGCGGGCcUUUCCUGcUGuGG- -5'
16320 3' -57.6 NC_004084.1 + 1807 0.7 0.436095
Target:  5'- cCGGCGAacuCGCcgaCCGGc---GACGACGCCg -3'
miRNA:   3'- -GCCGCU---GCG---GGCCuuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 19574 0.69 0.445467
Target:  5'- aGGaCGACGuCCCaGAccacGAGGACGACGa- -3'
miRNA:   3'- gCC-GCUGC-GGGcCU----UUCCUGCUGUgg -5'
16320 3' -57.6 NC_004084.1 + 13947 0.67 0.607534
Target:  5'- aGGCGAgccucaaacuCGCuCCGGAAcGGuCGAUGCa -3'
miRNA:   3'- gCCGCU----------GCG-GGCCUUuCCuGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 23074 0.67 0.596961
Target:  5'- cCGGCGACGCgaCG---AGGugGACGUCg -3'
miRNA:   3'- -GCCGCUGCGg-GCcuuUCCugCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 35886 0.67 0.585362
Target:  5'- uCGGuCGucuuCGgCCGGAggcgaucgucgucGAGGAUGACGCg -3'
miRNA:   3'- -GCC-GCu---GCgGGCCU-------------UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 11045 0.67 0.575904
Target:  5'- cCGuCGACGaCgCGGAcgaAGGGGCGGcCGCCg -3'
miRNA:   3'- -GCcGCUGC-GgGCCU---UUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 8347 0.67 0.574855
Target:  5'- cCGGCGuuuuCGagagcaaucgccaCCCGGuGAGGGACGAgCAUCu -3'
miRNA:   3'- -GCCGCu---GC-------------GGGCC-UUUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 9687 0.68 0.534362
Target:  5'- gGGUGGCcCgCCGGAGAccgcggugaguuGGcCGACGCCg -3'
miRNA:   3'- gCCGCUGcG-GGCCUUU------------CCuGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 18784 0.67 0.607534
Target:  5'- uCGGCGuCGCguacgaucgacUCGucGAGGACGuCGCCg -3'
miRNA:   3'- -GCCGCuGCG-----------GGCcuUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 48711 0.67 0.607534
Target:  5'- cCGGCGACGUCCuuucGAgcagcAAGGAC--CACCu -3'
miRNA:   3'- -GCCGCUGCGGGc---CU-----UUCCUGcuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 29343 0.67 0.618128
Target:  5'- gCGGCGACGacgcCCCcGAgcGGGCGGuCGCg -3'
miRNA:   3'- -GCCGCUGC----GGGcCUuuCCUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 4947 0.66 0.628733
Target:  5'- uGGaUGACGUCCGccGGGaGACGACgACCc -3'
miRNA:   3'- gCC-GCUGCGGGCcuUUC-CUGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 28638 0.66 0.649942
Target:  5'- gGGagaaCGGCuUCCGcGAGGGGACGACcuACCg -3'
miRNA:   3'- gCC----GCUGcGGGC-CUUUCCUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 29989 0.66 0.649942
Target:  5'- cCGGCGuCGaCCUGGucgcuGGuGACGACGUCa -3'
miRNA:   3'- -GCCGCuGC-GGGCCuu---UC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 57951 0.66 0.660529
Target:  5'- aGGCGACGaaCCGGGcaacguccuGGGCGuccucCGCCg -3'
miRNA:   3'- gCCGCUGCg-GGCCUuu-------CCUGCu----GUGG- -5'
16320 3' -57.6 NC_004084.1 + 23709 1.11 0.000616
Target:  5'- cCGGCGACGCCCGGAAAGGACGACACCc -3'
miRNA:   3'- -GCCGCUGCGGGCCUUUCCUGCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.