miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 35788 0.73 0.275157
Target:  5'- cCGGaGGCG-CCGGGAAGGACG-CGCUc -3'
miRNA:   3'- -GCCgCUGCgGGCCUUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 54083 0.73 0.268497
Target:  5'- uCGGCGucgguggagaACGCuCCGGAcucGACGACGCCc -3'
miRNA:   3'- -GCCGC----------UGCG-GGCCUuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 378 0.68 0.513983
Target:  5'- -cGCGA-GCCCGG---GGACGuCGCCg -3'
miRNA:   3'- gcCGCUgCGGGCCuuuCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 10258 0.68 0.518034
Target:  5'- gCGGuCGGCGUCCGGAucacgauguucGAGGGCauccgguacaucucgGGCaACCa -3'
miRNA:   3'- -GCC-GCUGCGGGCCU-----------UUCCUG---------------CUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 25879 0.68 0.524134
Target:  5'- aGGCG-CGCU---GAAGGGCGACGCg -3'
miRNA:   3'- gCCGCuGCGGgccUUUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 57951 0.66 0.660529
Target:  5'- aGGCGACGaaCCGGGcaacguccuGGGCGuccucCGCCg -3'
miRNA:   3'- gCCGCUGCg-GGCCUuu-------CCUGCu----GUGG- -5'
16320 3' -57.6 NC_004084.1 + 29989 0.66 0.649942
Target:  5'- cCGGCGuCGaCCUGGucgcuGGuGACGACGUCa -3'
miRNA:   3'- -GCCGCuGC-GGGCCuu---UC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 28638 0.66 0.649942
Target:  5'- gGGagaaCGGCuUCCGcGAGGGGACGACcuACCg -3'
miRNA:   3'- gCC----GCUGcGGGC-CUUUCCUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 4947 0.66 0.628733
Target:  5'- uGGaUGACGUCCGccGGGaGACGACgACCc -3'
miRNA:   3'- gCC-GCUGCGGGCcuUUC-CUGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 29343 0.67 0.618128
Target:  5'- gCGGCGACGacgcCCCcGAgcGGGCGGuCGCg -3'
miRNA:   3'- -GCCGCUGC----GGGcCUuuCCUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 48711 0.67 0.607534
Target:  5'- cCGGCGACGUCCuuucGAgcagcAAGGAC--CACCu -3'
miRNA:   3'- -GCCGCUGCGGGc---CU-----UUCCUGcuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 18784 0.67 0.607534
Target:  5'- uCGGCGuCGCguacgaucgacUCGucGAGGACGuCGCCg -3'
miRNA:   3'- -GCCGCuGCG-----------GGCcuUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 13947 0.67 0.607534
Target:  5'- aGGCGAgccucaaacuCGCuCCGGAAcGGuCGAUGCa -3'
miRNA:   3'- gCCGCU----------GCG-GGCCUUuCCuGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 23074 0.67 0.596961
Target:  5'- cCGGCGACGCgaCG---AGGugGACGUCg -3'
miRNA:   3'- -GCCGCUGCGg-GCcuuUCCugCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 35886 0.67 0.585362
Target:  5'- uCGGuCGucuuCGgCCGGAggcgaucgucgucGAGGAUGACGCg -3'
miRNA:   3'- -GCC-GCu---GCgGGCCU-------------UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 11045 0.67 0.575904
Target:  5'- cCGuCGACGaCgCGGAcgaAGGGGCGGcCGCCg -3'
miRNA:   3'- -GCcGCUGC-GgGCCU---UUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 8347 0.67 0.574855
Target:  5'- cCGGCGuuuuCGagagcaaucgccaCCCGGuGAGGGACGAgCAUCu -3'
miRNA:   3'- -GCCGCu---GC-------------GGGCC-UUUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 9687 0.68 0.534362
Target:  5'- gGGUGGCcCgCCGGAGAccgcggugaguuGGcCGACGCCg -3'
miRNA:   3'- gCCGCUGcG-GGCCUUU------------CCuGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 1018 0.68 0.524134
Target:  5'- cCGGCGACGUCgaCGcGAucGGGGGCG-CGCUc -3'
miRNA:   3'- -GCCGCUGCGG--GC-CU--UUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 30242 0.68 0.524134
Target:  5'- gCGGCGACGUCgaacaGGccGAGGACGGacuauuccaGCCg -3'
miRNA:   3'- -GCCGCUGCGGg----CCu-UUCCUGCUg--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.