miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 22118 0.67 0.607534
Target:  5'- uGGCGAaucgcaucccCGgCUGGGAAGcGAUGACugACCg -3'
miRNA:   3'- gCCGCU----------GCgGGCCUUUC-CUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 10208 0.66 0.628733
Target:  5'- aGGCGAuCGCCUGGAggaguuccuuGAGuACGAgCGCg -3'
miRNA:   3'- gCCGCU-GCGGGCCU----------UUCcUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 40329 0.66 0.628733
Target:  5'- --cUGACGUCCGaGAucguccucgAAGGGCGGCACa -3'
miRNA:   3'- gccGCUGCGGGC-CU---------UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 1865 0.66 0.632976
Target:  5'- aCGGaCGACGucgccuCCUGGAcugccacgccaagucGGGGAUGGgGCCg -3'
miRNA:   3'- -GCC-GCUGC------GGGCCU---------------UUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 30284 0.66 0.632976
Target:  5'- uCGGCGugG-UCGGGAAGGccgcgaaauuuacuuACGgauGCGCCu -3'
miRNA:   3'- -GCCGCugCgGGCCUUUCC---------------UGC---UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 18819 0.66 0.63828
Target:  5'- uCGGCGacgccagacaagcGCGCCCGGGAccucgucGACGAgCugCu -3'
miRNA:   3'- -GCCGC-------------UGCGGGCCUUuc-----CUGCU-GugG- -5'
16320 3' -57.6 NC_004084.1 + 1767 0.66 0.639341
Target:  5'- cCGaGCGGgGCCUGGcGAGGugGucguucugaGCCa -3'
miRNA:   3'- -GC-CGCUgCGGGCCuUUCCugCug-------UGG- -5'
16320 3' -57.6 NC_004084.1 + 9698 0.67 0.595905
Target:  5'- aGGUGGuccuugcUGCUC-GAAAGGACGuCGCCg -3'
miRNA:   3'- gCCGCU-------GCGGGcCUUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8239 0.67 0.586415
Target:  5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 43180 0.71 0.349074
Target:  5'- aCGGaGuCGCCCGaGGAGguGGACGAUGCCc -3'
miRNA:   3'- -GCCgCuGCGGGC-CUUU--CCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 40901 0.72 0.333222
Target:  5'- gCGGCGACG-CUGGAGgccuGGACGAggagcagcUACCg -3'
miRNA:   3'- -GCCGCUGCgGGCCUUu---CCUGCU--------GUGG- -5'
16320 3' -57.6 NC_004084.1 + 29540 0.69 0.47132
Target:  5'- cCGGUGACGCgCCGGAgcGuaagcaggccguugAGGGCcauCGCCg -3'
miRNA:   3'- -GCCGCUGCG-GGCCU--U--------------UCCUGcu-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 45521 0.68 0.503912
Target:  5'- uCGGCcacuccgagGACGCCgGGAuGGGuuGGCGCg -3'
miRNA:   3'- -GCCG---------CUGCGGgCCUuUCCugCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 41628 0.69 0.484036
Target:  5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3'
miRNA:   3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 29067 0.68 0.513983
Target:  5'- -cGCGAcCGCCCGcucGGGGGCGucguCGCCg -3'
miRNA:   3'- gcCGCU-GCGGGCcu-UUCCUGCu---GUGG- -5'
16320 3' -57.6 NC_004084.1 + 437 0.69 0.474239
Target:  5'- aCGGCGAC-CUCGaGAcggcGGAgGACGCCc -3'
miRNA:   3'- -GCCGCUGcGGGC-CUuu--CCUgCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 19497 0.69 0.474239
Target:  5'- aGGCGAgcaggaGCCCGGGA---GCGaACGCCg -3'
miRNA:   3'- gCCGCUg-----CGGGCCUUuccUGC-UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 39354 0.69 0.454951
Target:  5'- --cCGAaccUGCCCGuucguGAGGACGACGCCg -3'
miRNA:   3'- gccGCU---GCGGGCcu---UUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 30424 0.73 0.261967
Target:  5'- gGGCGGCGa-CGGAagcgauggcGAGGACGACGuCCc -3'
miRNA:   3'- gCCGCUGCggGCCU---------UUCCUGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 44229 0.71 0.356381
Target:  5'- uGGcCGACGgCUGGGAgcucgucuacgacGGGACGACcgGCCu -3'
miRNA:   3'- gCC-GCUGCgGGCCUU-------------UCCUGCUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.