miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 55971 0.72 0.317904
Target:  5'- aCGGCGACGC--GGAGGGGcUGAuCGCCg -3'
miRNA:   3'- -GCCGCUGCGggCCUUUCCuGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 29363 0.73 0.296644
Target:  5'- uGGuCGACGCCCGGGAucccgcgucccuccuGGAaggUGAUGCCg -3'
miRNA:   3'- gCC-GCUGCGGGCCUUu--------------CCU---GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 30424 0.73 0.261967
Target:  5'- gGGCGGCGa-CGGAagcgauggcGAGGACGACGuCCc -3'
miRNA:   3'- gCCGCUGCggGCCU---------UUCCUGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 51405 0.73 0.261967
Target:  5'- gCGGcCGACGCCgucgaGGccuucGAGGGCGACACg -3'
miRNA:   3'- -GCC-GCUGCGGg----CCu----UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 29540 0.69 0.47132
Target:  5'- cCGGUGACGCgCCGGAgcGuaagcaggccguugAGGGCcauCGCCg -3'
miRNA:   3'- -GCCGCUGCG-GGCCU--U--------------UCCUGcu-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 19497 0.69 0.474239
Target:  5'- aGGCGAgcaggaGCCCGGGA---GCGaACGCCg -3'
miRNA:   3'- gCCGCUg-----CGGGCCUUuccUGC-UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 437 0.69 0.474239
Target:  5'- aCGGCGAC-CUCGaGAcggcGGAgGACGCCc -3'
miRNA:   3'- -GCCGCUGcGGGC-CUuu--CCUgCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9698 0.67 0.595905
Target:  5'- aGGUGGuccuugcUGCUC-GAAAGGACGuCGCCg -3'
miRNA:   3'- gCCGCU-------GCGGGcCUUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8239 0.67 0.586415
Target:  5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 25479 0.67 0.586415
Target:  5'- gGGCGGCGUCa-GAAGGuGCG-CGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUCcUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8964 0.67 0.586415
Target:  5'- gCGGCGACGaagaCGGc-GGGACGAgGgCa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuuUCCUGCUgUgG- -5'
16320 3' -57.6 NC_004084.1 + 7512 0.67 0.585362
Target:  5'- aCGGgGagacuGCGCCCGagugggugcagccGAuccAGGACGGCAUCg -3'
miRNA:   3'- -GCCgC-----UGCGGGC-------------CUu--UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 47432 0.67 0.580104
Target:  5'- uCGGCGAcaagacgauccgauuCGaCCCGGAGAuGGuCGAUgucgACCg -3'
miRNA:   3'- -GCCGCU---------------GC-GGGCCUUU-CCuGCUG----UGG- -5'
16320 3' -57.6 NC_004084.1 + 30574 0.67 0.568572
Target:  5'- gCGGCGACGgucggcgaaCCGGAgcgggguGAGGugGcgcgggaucuucucgACGCCg -3'
miRNA:   3'- -GCCGCUGCg--------GGCCU-------UUCCugC---------------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 39718 0.67 0.565437
Target:  5'- aCGGCGACGaCgCCGucGAcGAGGAUGACGa- -3'
miRNA:   3'- -GCCGCUGC-G-GGC--CU-UUCCUGCUGUgg -5'
16320 3' -57.6 NC_004084.1 + 49687 0.67 0.565437
Target:  5'- cCGGCGACaUCCac-GAGGGUGACGCCg -3'
miRNA:   3'- -GCCGCUGcGGGccuUUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 41403 0.67 0.565437
Target:  5'- gGGCGAggaGgCCGGGAAGGuaGCGACcgAUCu -3'
miRNA:   3'- gCCGCUg--CgGGCCUUUCC--UGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 29067 0.68 0.513983
Target:  5'- -cGCGAcCGCCCGcucGGGGGCGucguCGCCg -3'
miRNA:   3'- gcCGCU-GCGGGCcu-UUCCUGCu---GUGG- -5'
16320 3' -57.6 NC_004084.1 + 45521 0.68 0.503912
Target:  5'- uCGGCcacuccgagGACGCCgGGAuGGGuuGGCGCg -3'
miRNA:   3'- -GCCG---------CUGCGGgCCUuUCCugCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 41628 0.69 0.484036
Target:  5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3'
miRNA:   3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.