miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 30574 0.67 0.568572
Target:  5'- gCGGCGACGgucggcgaaCCGGAgcgggguGAGGugGcgcgggaucuucucgACGCCg -3'
miRNA:   3'- -GCCGCUGCg--------GGCCU-------UUCCugC---------------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 47432 0.67 0.580104
Target:  5'- uCGGCGAcaagacgauccgauuCGaCCCGGAGAuGGuCGAUgucgACCg -3'
miRNA:   3'- -GCCGCU---------------GC-GGGCCUUU-CCuGCUG----UGG- -5'
16320 3' -57.6 NC_004084.1 + 7512 0.67 0.585362
Target:  5'- aCGGgGagacuGCGCCCGagugggugcagccGAuccAGGACGGCAUCg -3'
miRNA:   3'- -GCCgC-----UGCGGGC-------------CUu--UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8964 0.67 0.586415
Target:  5'- gCGGCGACGaagaCGGc-GGGACGAgGgCa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuuUCCUGCUgUgG- -5'
16320 3' -57.6 NC_004084.1 + 25479 0.67 0.586415
Target:  5'- gGGCGGCGUCa-GAAGGuGCG-CGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUCcUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8239 0.67 0.586415
Target:  5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9698 0.67 0.595905
Target:  5'- aGGUGGuccuugcUGCUC-GAAAGGACGuCGCCg -3'
miRNA:   3'- gCCGCU-------GCGGGcCUUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9857 0.67 0.596961
Target:  5'- gGGCGGCucacgcgggaGCCCGGcgGAAGaGuCGGCgACCg -3'
miRNA:   3'- gCCGCUG----------CGGGCC--UUUC-CuGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 41403 0.67 0.565437
Target:  5'- gGGCGAggaGgCCGGGAAGGuaGCGACcgAUCu -3'
miRNA:   3'- gCCGCUg--CgGGCCUUUCC--UGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 39619 0.67 0.564392
Target:  5'- cCGGCGACGUCCucgacGAGucGaucguacGCGACGCCg -3'
miRNA:   3'- -GCCGCUGCGGGc----CUUucC-------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 41628 0.69 0.484036
Target:  5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3'
miRNA:   3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 45521 0.68 0.503912
Target:  5'- uCGGCcacuccgagGACGCCgGGAuGGGuuGGCGCg -3'
miRNA:   3'- -GCCG---------CUGCGGgCCUuUCCugCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 29067 0.68 0.513983
Target:  5'- -cGCGAcCGCCCGcucGGGGGCGucguCGCCg -3'
miRNA:   3'- gcCGCU-GCGGGCcu-UUCCUGCu---GUGG- -5'
16320 3' -57.6 NC_004084.1 + 7429 0.68 0.524134
Target:  5'- gGGCGAUGCCgaCGGu--GG-CGAgACCu -3'
miRNA:   3'- gCCGCUGCGG--GCCuuuCCuGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 22484 0.68 0.524134
Target:  5'- cCGGCGACGCCgGGGAcaugcuCGugAaCCg -3'
miRNA:   3'- -GCCGCUGCGGgCCUUuccu--GCugU-GG- -5'
16320 3' -57.6 NC_004084.1 + 14604 0.68 0.534362
Target:  5'- aGGUGACuGCCacaaaCGGuggGAGGAaaUGGCACCa -3'
miRNA:   3'- gCCGCUG-CGG-----GCCu--UUCCU--GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 6439 0.68 0.544658
Target:  5'- uGGUG-CGCCCGaGGAGGGugcUGGCgGCCu -3'
miRNA:   3'- gCCGCuGCGGGC-CUUUCCu--GCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 1242 0.68 0.54776
Target:  5'- gGGCGaucGCGCCCaucuccucauccuGGACGACAUCa -3'
miRNA:   3'- gCCGC---UGCGGGccuuu--------CCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 36943 0.68 0.555019
Target:  5'- aGGCGAucgcCGCCCuc-GAGGGCGA-GCCg -3'
miRNA:   3'- gCCGCU----GCGGGccuUUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 49074 0.68 0.555019
Target:  5'- uCGGCGcgaaGCCCGGc-GGGAUcaaGCACCc -3'
miRNA:   3'- -GCCGCug--CGGGCCuuUCCUGc--UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.