miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16321 3' -57.5 NC_004084.1 + 41403 0.66 0.631328
Target:  5'- -gGGCGAGGaGGCCGGGaagguAGCgacCGAu -3'
miRNA:   3'- caCUGCUCUaCCGGCCCc----UCGaa-GCU- -5'
16321 3' -57.5 NC_004084.1 + 7130 0.66 0.598944
Target:  5'- gGUGAUGAucuccguguaGGUguucGGCCGGGGuGgUUCGGg -3'
miRNA:   3'- -CACUGCU----------CUA----CCGGCCCCuCgAAGCU- -5'
16321 3' -57.5 NC_004084.1 + 23011 0.66 0.577477
Target:  5'- -cGACGAcGAUGacccGUCGGucgugaucuGGAGCUUCGAc -3'
miRNA:   3'- caCUGCU-CUAC----CGGCC---------CCUCGAAGCU- -5'
16321 3' -57.5 NC_004084.1 + 53265 0.67 0.563612
Target:  5'- -cGACGAGAUcgGGCCGGGcGAcguccuggcgaccaGCcgCGAg -3'
miRNA:   3'- caCUGCUCUA--CCGGCCC-CU--------------CGaaGCU- -5'
16321 3' -57.5 NC_004084.1 + 47033 0.67 0.556183
Target:  5'- -cGAUGAcGAU-GCCGGGGAGUgccCGGa -3'
miRNA:   3'- caCUGCU-CUAcCGGCCCCUCGaa-GCU- -5'
16321 3' -57.5 NC_004084.1 + 30345 0.67 0.524697
Target:  5'- -cGGCGAGGUGGCCGac-GGCgUCGGa -3'
miRNA:   3'- caCUGCUCUACCGGCcccUCGaAGCU- -5'
16321 3' -57.5 NC_004084.1 + 46200 0.69 0.444559
Target:  5'- -cGACGAGcUGGCCgaguacuaucccGGGGAGC--CGAu -3'
miRNA:   3'- caCUGCUCuACCGG------------CCCCUCGaaGCU- -5'
16321 3' -57.5 NC_004084.1 + 44218 0.69 0.416307
Target:  5'- -cGACGAgcgGAUGGCCGacggcuGGGAGCU-CGu -3'
miRNA:   3'- caCUGCU---CUACCGGC------CCCUCGAaGCu -5'
16321 3' -57.5 NC_004084.1 + 22816 0.72 0.307503
Target:  5'- cUGugGAGAUcgGGCCGGGuGAGgCguucgUCGAc -3'
miRNA:   3'- cACugCUCUA--CCGGCCC-CUC-Ga----AGCU- -5'
16321 3' -57.5 NC_004084.1 + 46720 0.73 0.233537
Target:  5'- -cGACGAG-UGGUCGGGcGAGCacaUCGAu -3'
miRNA:   3'- caCUGCUCuACCGGCCC-CUCGa--AGCU- -5'
16321 3' -57.5 NC_004084.1 + 30120 0.74 0.227612
Target:  5'- cUGGgGAGcgGGCCGGGGAacuGCU-CGAu -3'
miRNA:   3'- cACUgCUCuaCCGGCCCCU---CGAaGCU- -5'
16321 3' -57.5 NC_004084.1 + 37863 0.77 0.141172
Target:  5'- -cGaACGGGAUGGCCGGGcGGGUgUCGGa -3'
miRNA:   3'- caC-UGCUCUACCGGCCC-CUCGaAGCU- -5'
16321 3' -57.5 NC_004084.1 + 23495 1.09 0.000663
Target:  5'- cGUGACGAGAUGGCCGGGGAGCUUCGAg -3'
miRNA:   3'- -CACUGCUCUACCGGCCCCUCGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.