Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16321 | 3' | -57.5 | NC_004084.1 | + | 7130 | 0.66 | 0.598944 |
Target: 5'- gGUGAUGAucuccguguaGGUguucGGCCGGGGuGgUUCGGg -3' miRNA: 3'- -CACUGCU----------CUA----CCGGCCCCuCgAAGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 22816 | 0.72 | 0.307503 |
Target: 5'- cUGugGAGAUcgGGCCGGGuGAGgCguucgUCGAc -3' miRNA: 3'- cACugCUCUA--CCGGCCC-CUC-Ga----AGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 23011 | 0.66 | 0.577477 |
Target: 5'- -cGACGAcGAUGacccGUCGGucgugaucuGGAGCUUCGAc -3' miRNA: 3'- caCUGCU-CUAC----CGGCC---------CCUCGAAGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 23495 | 1.09 | 0.000663 |
Target: 5'- cGUGACGAGAUGGCCGGGGAGCUUCGAg -3' miRNA: 3'- -CACUGCUCUACCGGCCCCUCGAAGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 30120 | 0.74 | 0.227612 |
Target: 5'- cUGGgGAGcgGGCCGGGGAacuGCU-CGAu -3' miRNA: 3'- cACUgCUCuaCCGGCCCCU---CGAaGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 30345 | 0.67 | 0.524697 |
Target: 5'- -cGGCGAGGUGGCCGac-GGCgUCGGa -3' miRNA: 3'- caCUGCUCUACCGGCcccUCGaAGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 37863 | 0.77 | 0.141172 |
Target: 5'- -cGaACGGGAUGGCCGGGcGGGUgUCGGa -3' miRNA: 3'- caC-UGCUCUACCGGCCC-CUCGaAGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 41403 | 0.66 | 0.631328 |
Target: 5'- -gGGCGAGGaGGCCGGGaagguAGCgacCGAu -3' miRNA: 3'- caCUGCUCUaCCGGCCCc----UCGaa-GCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 44218 | 0.69 | 0.416307 |
Target: 5'- -cGACGAgcgGAUGGCCGacggcuGGGAGCU-CGu -3' miRNA: 3'- caCUGCU---CUACCGGC------CCCUCGAaGCu -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 46200 | 0.69 | 0.444559 |
Target: 5'- -cGACGAGcUGGCCgaguacuaucccGGGGAGC--CGAu -3' miRNA: 3'- caCUGCUCuACCGG------------CCCCUCGaaGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 46720 | 0.73 | 0.233537 |
Target: 5'- -cGACGAG-UGGUCGGGcGAGCacaUCGAu -3' miRNA: 3'- caCUGCUCuACCGGCCC-CUCGa--AGCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 47033 | 0.67 | 0.556183 |
Target: 5'- -cGAUGAcGAU-GCCGGGGAGUgccCGGa -3' miRNA: 3'- caCUGCU-CUAcCGGCCCCUCGaa-GCU- -5' |
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16321 | 3' | -57.5 | NC_004084.1 | + | 53265 | 0.67 | 0.563612 |
Target: 5'- -cGACGAGAUcgGGCCGGGcGAcguccuggcgaccaGCcgCGAg -3' miRNA: 3'- caCUGCUCUA--CCGGCCC-CU--------------CGaaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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