miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16321 5' -53.1 NC_004084.1 + 23133 0.66 0.844909
Target:  5'- cGAUCGAGGAcCUCCCcagcGCCG-AGGa-- -3'
miRNA:   3'- -CUAGCUUCUaGAGGG----CGGUgUCCaag -5'
16321 5' -53.1 NC_004084.1 + 54937 0.66 0.844909
Target:  5'- cGAUCG-GGAUCcUCCGCCuCGGGa-- -3'
miRNA:   3'- -CUAGCuUCUAGaGGGCGGuGUCCaag -5'
16321 5' -53.1 NC_004084.1 + 4929 0.66 0.844909
Target:  5'- cGUCGAGGggCUCCaGCCGCucgAGGa-- -3'
miRNA:   3'- cUAGCUUCuaGAGGgCGGUG---UCCaag -5'
16321 5' -53.1 NC_004084.1 + 21954 0.66 0.844029
Target:  5'- gGGUCG-AGAUCUCCCGgacgacgcggauaCC-CAGGaugUCg -3'
miRNA:   3'- -CUAGCuUCUAGAGGGC-------------GGuGUCCa--AG- -5'
16321 5' -53.1 NC_004084.1 + 5869 0.66 0.817546
Target:  5'- cGAUCGAcgaGGAggagCagaCCGCCACGGGg-- -3'
miRNA:   3'- -CUAGCU---UCUa---Gag-GGCGGUGUCCaag -5'
16321 5' -53.1 NC_004084.1 + 21281 0.66 0.808009
Target:  5'- --aCGAccAGAUCUUCCGCCGCGugauGGa-- -3'
miRNA:   3'- cuaGCU--UCUAGAGGGCGGUGU----CCaag -5'
16321 5' -53.1 NC_004084.1 + 44712 0.66 0.807044
Target:  5'- aGUCGggGAUCUCUgGCaucccuuCGCGGGcugcUUCg -3'
miRNA:   3'- cUAGCuuCUAGAGGgCG-------GUGUCC----AAG- -5'
16321 5' -53.1 NC_004084.1 + 9738 0.67 0.788374
Target:  5'- -uUCGAGGAUCUCCCacGUCGCGaccUUCg -3'
miRNA:   3'- cuAGCUUCUAGAGGG--CGGUGUcc-AAG- -5'
16321 5' -53.1 NC_004084.1 + 43497 0.68 0.693073
Target:  5'- --cCGAAGAgg-CCCGCgACcGGUUCg -3'
miRNA:   3'- cuaGCUUCUagaGGGCGgUGuCCAAG- -5'
16321 5' -53.1 NC_004084.1 + 28702 0.69 0.682021
Target:  5'- --cCGGAcGAUCUCCUcgaacgGCCGCgcGGGUUCg -3'
miRNA:   3'- cuaGCUU-CUAGAGGG------CGGUG--UCCAAG- -5'
16321 5' -53.1 NC_004084.1 + 41578 0.69 0.648617
Target:  5'- cAUCGAcgGGAUCUCCCGCCcuGCcuGGa-- -3'
miRNA:   3'- cUAGCU--UCUAGAGGGCGG--UGu-CCaag -5'
16321 5' -53.1 NC_004084.1 + 51672 0.7 0.592765
Target:  5'- uGAUCGAGGAgUUCCC-CUACGGGacgUCg -3'
miRNA:   3'- -CUAGCUUCUaGAGGGcGGUGUCCa--AG- -5'
16321 5' -53.1 NC_004084.1 + 10743 0.7 0.570597
Target:  5'- cGGUUGggGAUCcggCUCGCCAguGGgggcgUCg -3'
miRNA:   3'- -CUAGCuuCUAGa--GGGCGGUguCCa----AG- -5'
16321 5' -53.1 NC_004084.1 + 48225 0.71 0.537754
Target:  5'- cGAUCGccuGAGAagUCUCCCGCCGCguugAGcGUUUg -3'
miRNA:   3'- -CUAGC---UUCU--AGAGGGCGGUG----UC-CAAG- -5'
16321 5' -53.1 NC_004084.1 + 23535 1.1 0.001382
Target:  5'- gGAUCGAAGAUCUCCCGCCACAGGUUCg -3'
miRNA:   3'- -CUAGCUUCUAGAGGGCGGUGUCCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.