Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16321 | 5' | -53.1 | NC_004084.1 | + | 4929 | 0.66 | 0.844909 |
Target: 5'- cGUCGAGGggCUCCaGCCGCucgAGGa-- -3' miRNA: 3'- cUAGCUUCuaGAGGgCGGUG---UCCaag -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 5869 | 0.66 | 0.817546 |
Target: 5'- cGAUCGAcgaGGAggagCagaCCGCCACGGGg-- -3' miRNA: 3'- -CUAGCU---UCUa---Gag-GGCGGUGUCCaag -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 9738 | 0.67 | 0.788374 |
Target: 5'- -uUCGAGGAUCUCCCacGUCGCGaccUUCg -3' miRNA: 3'- cuAGCUUCUAGAGGG--CGGUGUcc-AAG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 10743 | 0.7 | 0.570597 |
Target: 5'- cGGUUGggGAUCcggCUCGCCAguGGgggcgUCg -3' miRNA: 3'- -CUAGCuuCUAGa--GGGCGGUguCCa----AG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 21281 | 0.66 | 0.808009 |
Target: 5'- --aCGAccAGAUCUUCCGCCGCGugauGGa-- -3' miRNA: 3'- cuaGCU--UCUAGAGGGCGGUGU----CCaag -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 21954 | 0.66 | 0.844029 |
Target: 5'- gGGUCG-AGAUCUCCCGgacgacgcggauaCC-CAGGaugUCg -3' miRNA: 3'- -CUAGCuUCUAGAGGGC-------------GGuGUCCa--AG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 23133 | 0.66 | 0.844909 |
Target: 5'- cGAUCGAGGAcCUCCCcagcGCCG-AGGa-- -3' miRNA: 3'- -CUAGCUUCUaGAGGG----CGGUgUCCaag -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 23535 | 1.1 | 0.001382 |
Target: 5'- gGAUCGAAGAUCUCCCGCCACAGGUUCg -3' miRNA: 3'- -CUAGCUUCUAGAGGGCGGUGUCCAAG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 28702 | 0.69 | 0.682021 |
Target: 5'- --cCGGAcGAUCUCCUcgaacgGCCGCgcGGGUUCg -3' miRNA: 3'- cuaGCUU-CUAGAGGG------CGGUG--UCCAAG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 41578 | 0.69 | 0.648617 |
Target: 5'- cAUCGAcgGGAUCUCCCGCCcuGCcuGGa-- -3' miRNA: 3'- cUAGCU--UCUAGAGGGCGG--UGu-CCaag -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 43497 | 0.68 | 0.693073 |
Target: 5'- --cCGAAGAgg-CCCGCgACcGGUUCg -3' miRNA: 3'- cuaGCUUCUagaGGGCGgUGuCCAAG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 44712 | 0.66 | 0.807044 |
Target: 5'- aGUCGggGAUCUCUgGCaucccuuCGCGGGcugcUUCg -3' miRNA: 3'- cUAGCuuCUAGAGGgCG-------GUGUCC----AAG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 48225 | 0.71 | 0.537754 |
Target: 5'- cGAUCGccuGAGAagUCUCCCGCCGCguugAGcGUUUg -3' miRNA: 3'- -CUAGC---UUCU--AGAGGGCGGUG----UC-CAAG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 51672 | 0.7 | 0.592765 |
Target: 5'- uGAUCGAGGAgUUCCC-CUACGGGacgUCg -3' miRNA: 3'- -CUAGCUUCUaGAGGGcGGUGUCCa--AG- -5' |
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16321 | 5' | -53.1 | NC_004084.1 | + | 54937 | 0.66 | 0.844909 |
Target: 5'- cGAUCG-GGAUCcUCCGCCuCGGGa-- -3' miRNA: 3'- -CUAGCuUCUAGaGGGCGGuGUCCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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