miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16322 5' -56.8 NC_004084.1 + 27004 0.66 0.677769
Target:  5'- cGGCcgCgUCGUcuGC-GACUUCGCCGAUa- -3'
miRNA:   3'- -CCGa-G-AGCG--CGaCUGAAGCGGCUGag -5'
16322 5' -56.8 NC_004084.1 + 50077 0.66 0.645369
Target:  5'- uGCUCUCGaaaaCGCcGGCUggaucauccgCGCCGACg- -3'
miRNA:   3'- cCGAGAGC----GCGaCUGAa---------GCGGCUGag -5'
16322 5' -56.8 NC_004084.1 + 20409 0.66 0.645369
Target:  5'- aGGCgCUUGauaaacaGCUGGCgcUCGCUGGCUUc -3'
miRNA:   3'- -CCGaGAGCg------CGACUGa-AGCGGCUGAG- -5'
16322 5' -56.8 NC_004084.1 + 48030 0.66 0.634532
Target:  5'- aGUUCuUCGCGCUcGA--UCGCCuGCUCg -3'
miRNA:   3'- cCGAG-AGCGCGA-CUgaAGCGGcUGAG- -5'
16322 5' -56.8 NC_004084.1 + 37937 0.66 0.633448
Target:  5'- cGGCgggaUCgUCGCGUUugaagacGACUUCGCCGG-UCg -3'
miRNA:   3'- -CCG----AG-AGCGCGA-------CUGAAGCGGCUgAG- -5'
16322 5' -56.8 NC_004084.1 + 14710 0.66 0.623693
Target:  5'- uGGCUCgaa-GCUGAuccaCUUCGUCGACg- -3'
miRNA:   3'- -CCGAGagcgCGACU----GAAGCGGCUGag -5'
16322 5' -56.8 NC_004084.1 + 13754 0.66 0.623693
Target:  5'- cGGCUCgcccucgaggUCGCGCUGG----GCgGGCUCg -3'
miRNA:   3'- -CCGAG----------AGCGCGACUgaagCGgCUGAG- -5'
16322 5' -56.8 NC_004084.1 + 18557 0.66 0.622609
Target:  5'- aGCUCagCGUGCUcGACggCGCCgcggccgccgaugGACUCg -3'
miRNA:   3'- cCGAGa-GCGCGA-CUGaaGCGG-------------CUGAG- -5'
16322 5' -56.8 NC_004084.1 + 14621 0.67 0.602046
Target:  5'- cGGCgcucCUCGcCGCcgGACUcucCGCCGGCg- -3'
miRNA:   3'- -CCGa---GAGC-GCGa-CUGAa--GCGGCUGag -5'
16322 5' -56.8 NC_004084.1 + 58186 0.67 0.580498
Target:  5'- cGGCUgcgugcaucgCUCGCcgGUcGACUUCGCUGGgUCa -3'
miRNA:   3'- -CCGA----------GAGCG--CGaCUGAAGCGGCUgAG- -5'
16322 5' -56.8 NC_004084.1 + 39599 0.67 0.580498
Target:  5'- gGGCgcgCUUGU-CUGGCgUCGCCGAC-Ca -3'
miRNA:   3'- -CCGa--GAGCGcGACUGaAGCGGCUGaG- -5'
16322 5' -56.8 NC_004084.1 + 15686 0.67 0.580498
Target:  5'- uGGCgCUCGCaGCcGAUcaacUCGCCGACg- -3'
miRNA:   3'- -CCGaGAGCG-CGaCUGa---AGCGGCUGag -5'
16322 5' -56.8 NC_004084.1 + 37007 0.67 0.580498
Target:  5'- cGGuCUCUCGCaGCUGGacgUCGaCCGGaUCa -3'
miRNA:   3'- -CC-GAGAGCG-CGACUga-AGC-GGCUgAG- -5'
16322 5' -56.8 NC_004084.1 + 55543 0.67 0.569782
Target:  5'- cGCgaUCGCGCUGGCUg-GCCGcgacgaACUCg -3'
miRNA:   3'- cCGagAGCGCGACUGAagCGGC------UGAG- -5'
16322 5' -56.8 NC_004084.1 + 35314 0.67 0.559116
Target:  5'- cGUUCgUCG-GCUGGCUauccgaggUCGCCGACg- -3'
miRNA:   3'- cCGAG-AGCgCGACUGA--------AGCGGCUGag -5'
16322 5' -56.8 NC_004084.1 + 15970 0.68 0.527486
Target:  5'- cGGUUCUgaCGgGCgguUGACUUCGcCCGuCUCu -3'
miRNA:   3'- -CCGAGA--GCgCG---ACUGAAGC-GGCuGAG- -5'
16322 5' -56.8 NC_004084.1 + 48565 0.68 0.517088
Target:  5'- gGGCUCcCGCGUgaGCcgcccUCGCCGACcUCg -3'
miRNA:   3'- -CCGAGaGCGCGacUGa----AGCGGCUG-AG- -5'
16322 5' -56.8 NC_004084.1 + 52838 0.68 0.515017
Target:  5'- uGCUCUCggcguucgGCGCUGGCgaccucgacaaCGUCGACUUa -3'
miRNA:   3'- cCGAGAG--------CGCGACUGaa---------GCGGCUGAG- -5'
16322 5' -56.8 NC_004084.1 + 53933 0.69 0.496546
Target:  5'- uGCagUUUCGUGUcgGGCUUCGCCaGCUCg -3'
miRNA:   3'- cCG--AGAGCGCGa-CUGAAGCGGcUGAG- -5'
16322 5' -56.8 NC_004084.1 + 16067 0.69 0.496546
Target:  5'- cGGC-CUgGCGCUcGAgUUcCGCCGcCUCg -3'
miRNA:   3'- -CCGaGAgCGCGA-CUgAA-GCGGCuGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.