Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16323 | 3' | -59.7 | NC_004084.1 | + | 28335 | 0.67 | 0.457146 |
Target: 5'- uCGCCGCCGuccuucuucucgcGGacgaguagcgguUCCUCGGUCagcguuucgACGUGCa -3' miRNA: 3'- -GCGGCGGCu------------CC------------AGGAGCUAG---------UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 50540 | 0.67 | 0.460943 |
Target: 5'- uCG-CGUCGAGGagcggagucUCCUCGAUCAUGUcCg -3' miRNA: 3'- -GCgGCGGCUCC---------AGGAGCUAGUGCGcG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 26720 | 0.67 | 0.460943 |
Target: 5'- aGCCGCUGAGGcCCgcUCGGccCACaGCGa -3' miRNA: 3'- gCGGCGGCUCCaGG--AGCUa-GUG-CGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 16522 | 0.67 | 0.480173 |
Target: 5'- gCGUCGCCGcGGucgucguggaccUCCUCGcaguUCGCGCagGCg -3' miRNA: 3'- -GCGGCGGCuCC------------AGGAGCu---AGUGCG--CG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 56936 | 0.67 | 0.480173 |
Target: 5'- aCGUCuaCcagGAGGUCgUCGAUCGC-CGCa -3' miRNA: 3'- -GCGGcgG---CUCCAGgAGCUAGUGcGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 18852 | 0.67 | 0.489934 |
Target: 5'- -uUCGUCGAcGGUCCcggucgagUCGAUCGCGCu- -3' miRNA: 3'- gcGGCGGCU-CCAGG--------AGCUAGUGCGcg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 1015 | 0.67 | 0.489934 |
Target: 5'- uCGCCGgCGAcGUCgacgCGAUCggggGCGCGCu -3' miRNA: 3'- -GCGGCgGCUcCAGga--GCUAG----UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 29427 | 0.67 | 0.489934 |
Target: 5'- uCGCgGUCaucAGG-CCgacgUCGGUCGCGCGCu -3' miRNA: 3'- -GCGgCGGc--UCCaGG----AGCUAGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 39617 | 0.67 | 0.489934 |
Target: 5'- gGCCGgCGAcGUCCUCGAcgagucgaucgUACGCGa -3' miRNA: 3'- gCGGCgGCUcCAGGAGCUa----------GUGCGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 30027 | 0.67 | 0.498797 |
Target: 5'- gCGCCGaUCGAGGUCUcgCGGgggccgcUCGCGuCGUu -3' miRNA: 3'- -GCGGC-GGCUCCAGGa-GCU-------AGUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 48970 | 0.67 | 0.499786 |
Target: 5'- uGCCGCCGAcuacgGcGUCCcgcagcacCGAgagCGCGUGCu -3' miRNA: 3'- gCGGCGGCU-----C-CAGGa-------GCUa--GUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 16123 | 0.67 | 0.499786 |
Target: 5'- uCGUCGCCGAucgugaacgGGUgaCCgcggUGGUCGCGCuGCu -3' miRNA: 3'- -GCGGCGGCU---------CCA--GGa---GCUAGUGCG-CG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28389 | 0.67 | 0.499786 |
Target: 5'- gGCCcCCGcGaGaCCUCGAUCGgCGCGUa -3' miRNA: 3'- gCGGcGGCuC-CaGGAGCUAGU-GCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 56400 | 0.66 | 0.509725 |
Target: 5'- gCGCCcaGCUGGGaGUCgaaCUCGAUCGCGUc- -3' miRNA: 3'- -GCGG--CGGCUC-CAG---GAGCUAGUGCGcg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 37097 | 0.66 | 0.509725 |
Target: 5'- cCGaCC-UCGAGGUcugCCUCGAUgACGcCGCu -3' miRNA: 3'- -GC-GGcGGCUCCA---GGAGCUAgUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28091 | 0.66 | 0.519746 |
Target: 5'- uCGCCGacggucaacgguUCGGGGUgcgCCUCGAcgaGCGCGUc -3' miRNA: 3'- -GCGGC------------GGCUCCA---GGAGCUag-UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 18885 | 0.66 | 0.519746 |
Target: 5'- gGCCaucaCGAGGagaUCCUCGAggACGuCGCg -3' miRNA: 3'- gCGGcg--GCUCC---AGGAGCUagUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 23286 | 0.66 | 0.519746 |
Target: 5'- aGCgGCCGAccaGUCC-CGAgcgaGCGCGUg -3' miRNA: 3'- gCGgCGGCUc--CAGGaGCUag--UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 3349 | 0.66 | 0.529844 |
Target: 5'- -aCCGCCGAuuGGUCgUCGA-CGUGCGUc -3' miRNA: 3'- gcGGCGGCU--CCAGgAGCUaGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 47948 | 0.66 | 0.529844 |
Target: 5'- gGCCGuCCGucAGGccgUCCUgGAUCGCcuCGCg -3' miRNA: 3'- gCGGC-GGC--UCC---AGGAgCUAGUGc-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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