miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 35140 0.66 0.540012
Target:  5'- gGgCGUCGAGGUCCUCGGggUACa--- -3'
miRNA:   3'- gCgGCGGCUCCAGGAGCUa-GUGcgcg -5'
16323 3' -59.7 NC_004084.1 + 35284 0.69 0.363223
Target:  5'- uCGgCGCUgggGAGGUCCUCGAUCGuuuCGaCGg -3'
miRNA:   3'- -GCgGCGG---CUCCAGGAGCUAGU---GC-GCg -5'
16323 3' -59.7 NC_004084.1 + 35336 0.69 0.379896
Target:  5'- gGUCGCCGAcGUCCaccUCG-UCGCGuCGCc -3'
miRNA:   3'- gCGGCGGCUcCAGG---AGCuAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 35710 0.67 0.451482
Target:  5'- aGCCGCacuCGAGGUUCUCa---GgGCGCg -3'
miRNA:   3'- gCGGCG---GCUCCAGGAGcuagUgCGCG- -5'
16323 3' -59.7 NC_004084.1 + 36242 0.66 0.540012
Target:  5'- uCGCCuaccggGUCGAcGUCCUCGAgugCGCcgagGCGCu -3'
miRNA:   3'- -GCGG------CGGCUcCAGGAGCUa--GUG----CGCG- -5'
16323 3' -59.7 NC_004084.1 + 36949 0.69 0.388422
Target:  5'- uCGCCGCCcucGAGGgcgagccgguUCCUCG-UCACGUcCg -3'
miRNA:   3'- -GCGGCGG---CUCC----------AGGAGCuAGUGCGcG- -5'
16323 3' -59.7 NC_004084.1 + 37097 0.66 0.509725
Target:  5'- cCGaCC-UCGAGGUcugCCUCGAUgACGcCGCu -3'
miRNA:   3'- -GC-GGcGGCUCCA---GGAGCUAgUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 39258 0.69 0.347065
Target:  5'- gGCgGCgGGaagaugguGGUCgUCGAUCGCGuCGCg -3'
miRNA:   3'- gCGgCGgCU--------CCAGgAGCUAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 39583 0.72 0.254772
Target:  5'- uCGUCGaCGAGGUCC-CGG--GCGCGCu -3'
miRNA:   3'- -GCGGCgGCUCCAGGaGCUagUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 39617 0.67 0.489934
Target:  5'- gGCCGgCGAcGUCCUCGAcgagucgaucgUACGCGa -3'
miRNA:   3'- gCGGCgGCUcCAGGAGCUa----------GUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 42364 0.68 0.423755
Target:  5'- gCGCCagGCCGAGcGggagcaacgcaUCCUCGAggaggCcCGCGCa -3'
miRNA:   3'- -GCGG--CGGCUC-C-----------AGGAGCUa----GuGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 44048 0.71 0.29463
Target:  5'- cCGCCGCCGuacagauGGugaUCCUCGc-CACGCGg -3'
miRNA:   3'- -GCGGCGGCu------CC---AGGAGCuaGUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 44531 0.69 0.363223
Target:  5'- aGCUGCagggGaAGGUCCUCGGcugCugGUGCc -3'
miRNA:   3'- gCGGCGg---C-UCCAGGAGCUa--GugCGCG- -5'
16323 3' -59.7 NC_004084.1 + 44605 0.66 0.550246
Target:  5'- -aUCGCCGAGuGggccgaucgCCUCGGUCGCGaccaaccggaCGCg -3'
miRNA:   3'- gcGGCGGCUC-Ca--------GGAGCUAGUGC----------GCG- -5'
16323 3' -59.7 NC_004084.1 + 45410 0.68 0.44027
Target:  5'- uGuuGCuCGAGGUCgUCGAUCGagccggaugucgGUGCg -3'
miRNA:   3'- gCggCG-GCUCCAGgAGCUAGUg-----------CGCG- -5'
16323 3' -59.7 NC_004084.1 + 46238 0.68 0.442128
Target:  5'- uCGCCGCUGGGGacguacCCUgCGAccUCGUGUGCg -3'
miRNA:   3'- -GCGGCGGCUCCa-----GGA-GCU--AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 47002 0.66 0.550246
Target:  5'- aCGaCCG-CGAGuUCCUCGAggACGuCGCg -3'
miRNA:   3'- -GC-GGCgGCUCcAGGAGCUagUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 47948 0.66 0.529844
Target:  5'- gGCCGuCCGucAGGccgUCCUgGAUCGCcuCGCg -3'
miRNA:   3'- gCGGC-GGC--UCC---AGGAgCUAGUGc-GCG- -5'
16323 3' -59.7 NC_004084.1 + 48970 0.67 0.499786
Target:  5'- uGCCGCCGAcuacgGcGUCCcgcagcacCGAgagCGCGUGCu -3'
miRNA:   3'- gCGGCGGCU-----C-CAGGa-------GCUa--GUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 49454 0.69 0.379896
Target:  5'- uCGUCGCCGccGUCUUCG-UCGC-CGCu -3'
miRNA:   3'- -GCGGCGGCucCAGGAGCuAGUGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.