miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 39617 0.67 0.489934
Target:  5'- gGCCGgCGAcGUCCUCGAcgagucgaucgUACGCGa -3'
miRNA:   3'- gCGGCgGCUcCAGGAGCUa----------GUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 18852 0.67 0.489934
Target:  5'- -uUCGUCGAcGGUCCcggucgagUCGAUCGCGCu- -3'
miRNA:   3'- gcGGCGGCU-CCAGG--------AGCUAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 1015 0.67 0.489934
Target:  5'- uCGCCGgCGAcGUCgacgCGAUCggggGCGCGCu -3'
miRNA:   3'- -GCGGCgGCUcCAGga--GCUAG----UGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 29427 0.67 0.489934
Target:  5'- uCGCgGUCaucAGG-CCgacgUCGGUCGCGCGCu -3'
miRNA:   3'- -GCGgCGGc--UCCaGG----AGCUAGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 56936 0.67 0.480173
Target:  5'- aCGUCuaCcagGAGGUCgUCGAUCGC-CGCa -3'
miRNA:   3'- -GCGGcgG---CUCCAGgAGCUAGUGcGCG- -5'
16323 3' -59.7 NC_004084.1 + 16522 0.67 0.480173
Target:  5'- gCGUCGCCGcGGucgucguggaccUCCUCGcaguUCGCGCagGCg -3'
miRNA:   3'- -GCGGCGGCuCC------------AGGAGCu---AGUGCG--CG- -5'
16323 3' -59.7 NC_004084.1 + 50540 0.67 0.460943
Target:  5'- uCG-CGUCGAGGagcggagucUCCUCGAUCAUGUcCg -3'
miRNA:   3'- -GCgGCGGCUCC---------AGGAGCUAGUGCGcG- -5'
16323 3' -59.7 NC_004084.1 + 26720 0.67 0.460943
Target:  5'- aGCCGCUGAGGcCCgcUCGGccCACaGCGa -3'
miRNA:   3'- gCGGCGGCUCCaGG--AGCUa-GUG-CGCg -5'
16323 3' -59.7 NC_004084.1 + 28335 0.67 0.457146
Target:  5'- uCGCCGCCGuccuucuucucgcGGacgaguagcgguUCCUCGGUCagcguuucgACGUGCa -3'
miRNA:   3'- -GCGGCGGCu------------CC------------AGGAGCUAG---------UGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 35710 0.67 0.451482
Target:  5'- aGCCGCacuCGAGGUUCUCa---GgGCGCg -3'
miRNA:   3'- gCGGCG---GCUCCAGGAGcuagUgCGCG- -5'
16323 3' -59.7 NC_004084.1 + 54312 0.67 0.449602
Target:  5'- aCGCUGuCCGGuGGuuauccucguuguugUCCUCGAUCAgguuccgcaucuccuCGCGCc -3'
miRNA:   3'- -GCGGC-GGCU-CC---------------AGGAGCUAGU---------------GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 14258 0.68 0.442128
Target:  5'- uGUCGaCCgggaccaggugGAGGUCCUCGucGUCGCGaGCg -3'
miRNA:   3'- gCGGC-GG-----------CUCCAGGAGC--UAGUGCgCG- -5'
16323 3' -59.7 NC_004084.1 + 46238 0.68 0.442128
Target:  5'- uCGCCGCUGGGGacguacCCUgCGAccUCGUGUGCg -3'
miRNA:   3'- -GCGGCGGCUCCa-----GGA-GCU--AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 45410 0.68 0.44027
Target:  5'- uGuuGCuCGAGGUCgUCGAUCGagccggaugucgGUGCg -3'
miRNA:   3'- gCggCG-GCUCCAGgAGCUAGUg-----------CGCG- -5'
16323 3' -59.7 NC_004084.1 + 1053 0.68 0.432885
Target:  5'- -uUCGCCGAGGUCgaacagccaCUCG-UCGCGCa- -3'
miRNA:   3'- gcGGCGGCUCCAG---------GAGCuAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 42364 0.68 0.423755
Target:  5'- gCGCCagGCCGAGcGggagcaacgcaUCCUCGAggaggCcCGCGCa -3'
miRNA:   3'- -GCGG--CGGCUC-C-----------AGGAGCUa----GuGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 21474 0.68 0.414742
Target:  5'- uCGCCcUCGAGGgcggcgaucgCCUCGGUUGCGuCGUa -3'
miRNA:   3'- -GCGGcGGCUCCa---------GGAGCUAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 15405 0.68 0.405847
Target:  5'- gCGUcuCGuuGGGGaacUCCUCGAUCGCGuCGa -3'
miRNA:   3'- -GCG--GCggCUCC---AGGAGCUAGUGC-GCg -5'
16323 3' -59.7 NC_004084.1 + 19964 0.68 0.405847
Target:  5'- aGCCgGCCGuGGUUgaCGAcgucgacgUCGCGCGUu -3'
miRNA:   3'- gCGG-CGGCuCCAGgaGCU--------AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 24998 0.68 0.397073
Target:  5'- aCGCgaUGuuGAGGcCCUCGuaCGCGUGCg -3'
miRNA:   3'- -GCG--GCggCUCCaGGAGCuaGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.