miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 5' -55.8 NC_004084.1 + 15697 0.66 0.759955
Target:  5'- cCUGCUCGCGAUCGgUGa-CGGuGAUCg -3'
miRNA:   3'- -GGUGAGCGCUGGCaACcaGCC-CUAGa -5'
16323 5' -55.8 NC_004084.1 + 35192 0.66 0.749879
Target:  5'- gCCGCUCGagcuccuCCGaaucGUCGGGAUCg -3'
miRNA:   3'- -GGUGAGCgcu----GGCaac-CAGCCCUAGa -5'
16323 5' -55.8 NC_004084.1 + 6875 0.66 0.739689
Target:  5'- gCCGgUCGUGgauGCCGagguacGUCGGGAUCg -3'
miRNA:   3'- -GGUgAGCGC---UGGCaac---CAGCCCUAGa -5'
16323 5' -55.8 NC_004084.1 + 1214 0.66 0.729395
Target:  5'- aCGCUgGCuGGCuCGgcGG-CGGGAUCg -3'
miRNA:   3'- gGUGAgCG-CUG-GCaaCCaGCCCUAGa -5'
16323 5' -55.8 NC_004084.1 + 52163 0.67 0.708539
Target:  5'- gCCAgugcucaUCGuCGACCGc--GUCGGGAUCg -3'
miRNA:   3'- -GGUg------AGC-GCUGGCaacCAGCCCUAGa -5'
16323 5' -55.8 NC_004084.1 + 18723 0.67 0.708539
Target:  5'- gUCACUgGCGgguucggucgaGCCGUUGcccugccaGUCGGGGUUg -3'
miRNA:   3'- -GGUGAgCGC-----------UGGCAAC--------CAGCCCUAGa -5'
16323 5' -55.8 NC_004084.1 + 20120 0.67 0.666053
Target:  5'- aCGCUCGuCGACggaaCGUcGGUCGGauucGAUCUg -3'
miRNA:   3'- gGUGAGC-GCUG----GCAaCCAGCC----CUAGA- -5'
16323 5' -55.8 NC_004084.1 + 41566 0.68 0.644587
Target:  5'- cCCACUUGCGAUCauc-GaCGGGAUCUc -3'
miRNA:   3'- -GGUGAGCGCUGGcaacCaGCCCUAGA- -5'
16323 5' -55.8 NC_004084.1 + 18642 0.68 0.61233
Target:  5'- gCCGacCUCGUcGCCGUcuucgGcGUCGGGAUCa -3'
miRNA:   3'- -GGU--GAGCGcUGGCAa----C-CAGCCCUAGa -5'
16323 5' -55.8 NC_004084.1 + 13601 0.7 0.486848
Target:  5'- -aGCUCGauaccgucacCGACCGggUGGUCGGGAccgUCg -3'
miRNA:   3'- ggUGAGC----------GCUGGCa-ACCAGCCCU---AGa -5'
16323 5' -55.8 NC_004084.1 + 22917 1.09 0.001205
Target:  5'- cCCACUCGCGACCGUUGGUCGGGAUCUc -3'
miRNA:   3'- -GGUGAGCGCUGGCAACCAGCCCUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.