miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16324 3' -56.3 NC_004084.1 + 45890 0.66 0.697015
Target:  5'- --gGCCGGUCGaguCCUGcuuGCGUacUUCUCCGa -3'
miRNA:   3'- cagUGGCUAGU---GGAC---CGCG--AAGAGGC- -5'
16324 3' -56.3 NC_004084.1 + 13495 0.66 0.686272
Target:  5'- cGUCAUCG-UCACCUcagcuaGGCGCgggUCgucgCCa -3'
miRNA:   3'- -CAGUGGCuAGUGGA------CCGCGa--AGa---GGc -5'
16324 3' -56.3 NC_004084.1 + 28669 0.66 0.686272
Target:  5'- gGUCAUCGucUCGCC-GGUGgUcUCUCCGg -3'
miRNA:   3'- -CAGUGGCu-AGUGGaCCGCgA-AGAGGC- -5'
16324 3' -56.3 NC_004084.1 + 40022 0.66 0.653784
Target:  5'- -aCAUCGccCGCCUGGaCGCUUCUgUGc -3'
miRNA:   3'- caGUGGCuaGUGGACC-GCGAAGAgGC- -5'
16324 3' -56.3 NC_004084.1 + 25574 0.66 0.642902
Target:  5'- -aCGCCGGUCACaCUGGUGaccuaUCUGg -3'
miRNA:   3'- caGUGGCUAGUG-GACCGCgaag-AGGC- -5'
16324 3' -56.3 NC_004084.1 + 16059 0.67 0.63201
Target:  5'- cUC-CCGcUCgGCCUGGCGCUcgagUUCCGc -3'
miRNA:   3'- cAGuGGCuAG-UGGACCGCGAa---GAGGC- -5'
16324 3' -56.3 NC_004084.1 + 10229 0.67 0.621119
Target:  5'- cGUCGCCGcuugagGUCGCCUGGUGagucgcggUCggcgUCCGg -3'
miRNA:   3'- -CAGUGGC------UAGUGGACCGCga------AG----AGGC- -5'
16324 3' -56.3 NC_004084.1 + 41074 0.67 0.610236
Target:  5'- cUCACuCGAgcccUCGCCUccGGCGUUgaUCUCCu -3'
miRNA:   3'- cAGUG-GCU----AGUGGA--CCGCGA--AGAGGc -5'
16324 3' -56.3 NC_004084.1 + 57659 0.67 0.588537
Target:  5'- --aGCCGAUCgGCCUGGUgguccaGCgcCUCCGa -3'
miRNA:   3'- cagUGGCUAG-UGGACCG------CGaaGAGGC- -5'
16324 3' -56.3 NC_004084.1 + 44616 0.69 0.487423
Target:  5'- --gGCCGAUCGCCUcggucgcgaccaaccGGaCGCgaUCUCCGa -3'
miRNA:   3'- cagUGGCUAGUGGA---------------CC-GCGa-AGAGGC- -5'
16324 3' -56.3 NC_004084.1 + 53790 0.71 0.405238
Target:  5'- -cCACCGGUgACCUcugccacGaGCGUUUCUCCGc -3'
miRNA:   3'- caGUGGCUAgUGGA-------C-CGCGAAGAGGC- -5'
16324 3' -56.3 NC_004084.1 + 43217 0.72 0.329155
Target:  5'- -aCGCCGAUCuCCUGGUGCgagUCCa -3'
miRNA:   3'- caGUGGCUAGuGGACCGCGaagAGGc -5'
16324 3' -56.3 NC_004084.1 + 29137 0.8 0.108726
Target:  5'- -aCGCCGAaCACCUGGCGCUg--CCGg -3'
miRNA:   3'- caGUGGCUaGUGGACCGCGAagaGGC- -5'
16324 3' -56.3 NC_004084.1 + 21796 1.08 0.00095
Target:  5'- cGUCACCGAUCACCUGGCGCUUCUCCGu -3'
miRNA:   3'- -CAGUGGCUAGUGGACCGCGAAGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.