Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16324 | 3' | -56.3 | NC_004084.1 | + | 13495 | 0.66 | 0.686272 |
Target: 5'- cGUCAUCG-UCACCUcagcuaGGCGCgggUCgucgCCa -3' miRNA: 3'- -CAGUGGCuAGUGGA------CCGCGa--AGa---GGc -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 25574 | 0.66 | 0.642902 |
Target: 5'- -aCGCCGGUCACaCUGGUGaccuaUCUGg -3' miRNA: 3'- caGUGGCUAGUG-GACCGCgaag-AGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 28669 | 0.66 | 0.686272 |
Target: 5'- gGUCAUCGucUCGCC-GGUGgUcUCUCCGg -3' miRNA: 3'- -CAGUGGCu-AGUGGaCCGCgA-AGAGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 45890 | 0.66 | 0.697015 |
Target: 5'- --gGCCGGUCGaguCCUGcuuGCGUacUUCUCCGa -3' miRNA: 3'- cagUGGCUAGU---GGAC---CGCG--AAGAGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 40022 | 0.66 | 0.653784 |
Target: 5'- -aCAUCGccCGCCUGGaCGCUUCUgUGc -3' miRNA: 3'- caGUGGCuaGUGGACC-GCGAAGAgGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 41074 | 0.67 | 0.610236 |
Target: 5'- cUCACuCGAgcccUCGCCUccGGCGUUgaUCUCCu -3' miRNA: 3'- cAGUG-GCU----AGUGGA--CCGCGA--AGAGGc -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 10229 | 0.67 | 0.621119 |
Target: 5'- cGUCGCCGcuugagGUCGCCUGGUGagucgcggUCggcgUCCGg -3' miRNA: 3'- -CAGUGGC------UAGUGGACCGCga------AG----AGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 16059 | 0.67 | 0.63201 |
Target: 5'- cUC-CCGcUCgGCCUGGCGCUcgagUUCCGc -3' miRNA: 3'- cAGuGGCuAG-UGGACCGCGAa---GAGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 57659 | 0.67 | 0.588537 |
Target: 5'- --aGCCGAUCgGCCUGGUgguccaGCgcCUCCGa -3' miRNA: 3'- cagUGGCUAG-UGGACCG------CGaaGAGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 44616 | 0.69 | 0.487423 |
Target: 5'- --gGCCGAUCGCCUcggucgcgaccaaccGGaCGCgaUCUCCGa -3' miRNA: 3'- cagUGGCUAGUGGA---------------CC-GCGa-AGAGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 53790 | 0.71 | 0.405238 |
Target: 5'- -cCACCGGUgACCUcugccacGaGCGUUUCUCCGc -3' miRNA: 3'- caGUGGCUAgUGGA-------C-CGCGAAGAGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 43217 | 0.72 | 0.329155 |
Target: 5'- -aCGCCGAUCuCCUGGUGCgagUCCa -3' miRNA: 3'- caGUGGCUAGuGGACCGCGaagAGGc -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 29137 | 0.8 | 0.108726 |
Target: 5'- -aCGCCGAaCACCUGGCGCUg--CCGg -3' miRNA: 3'- caGUGGCUaGUGGACCGCGAagaGGC- -5' |
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16324 | 3' | -56.3 | NC_004084.1 | + | 21796 | 1.08 | 0.00095 |
Target: 5'- cGUCACCGAUCACCUGGCGCUUCUCCGu -3' miRNA: 3'- -CAGUGGCUAGUGGACCGCGAAGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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