miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16324 5' -52.9 NC_004084.1 + 17384 0.66 0.817733
Target:  5'- cCGguGAGGAuCUCGCCG-GCaGAGUGa -3'
miRNA:   3'- -GUguCUCUU-GAGCGGUaCGcCUCAUg -5'
16324 5' -52.9 NC_004084.1 + 4810 0.66 0.817733
Target:  5'- gGCAGAGAagGCggGCCGgaucgGCGGGGa-- -3'
miRNA:   3'- gUGUCUCU--UGagCGGUa----CGCCUCaug -5'
16324 5' -52.9 NC_004084.1 + 45551 0.66 0.808158
Target:  5'- gGCGcGAGGAcCUCGaa--GCGGAGUACg -3'
miRNA:   3'- gUGU-CUCUU-GAGCgguaCGCCUCAUG- -5'
16324 5' -52.9 NC_004084.1 + 51109 0.67 0.757625
Target:  5'- aGCAGcgagaGGAGCUCGUCca--GGAGUACg -3'
miRNA:   3'- gUGUC-----UCUUGAGCGGuacgCCUCAUG- -5'
16324 5' -52.9 NC_004084.1 + 6534 0.67 0.757625
Target:  5'- aCGCGGAGAAgUUcgauuucgacaGCUGUGUGGAGaGCg -3'
miRNA:   3'- -GUGUCUCUUgAG-----------CGGUACGCCUCaUG- -5'
16324 5' -52.9 NC_004084.1 + 53503 0.68 0.747069
Target:  5'- gACGGcGAAgUCGUCGUGCGGuAGacUGCg -3'
miRNA:   3'- gUGUCuCUUgAGCGGUACGCC-UC--AUG- -5'
16324 5' -52.9 NC_004084.1 + 36233 0.68 0.691605
Target:  5'- -uCGGAGAACUCGCCuacCGGgucgacguccucgAGUGCg -3'
miRNA:   3'- guGUCUCUUGAGCGGuacGCC-------------UCAUG- -5'
16324 5' -52.9 NC_004084.1 + 43778 0.7 0.625591
Target:  5'- gACuGGGcGCUCGCCG-GCGGAGa-- -3'
miRNA:   3'- gUGuCUCuUGAGCGGUaCGCCUCaug -5'
16324 5' -52.9 NC_004084.1 + 30648 0.7 0.60315
Target:  5'- aCGCGaAGAACaCGCUGUgaGCGGAGUACu -3'
miRNA:   3'- -GUGUcUCUUGaGCGGUA--CGCCUCAUG- -5'
16324 5' -52.9 NC_004084.1 + 15532 0.73 0.45265
Target:  5'- aGCuuuuGAGAGCuUCGCC-UGcCGGAGUGCc -3'
miRNA:   3'- gUGu---CUCUUG-AGCGGuAC-GCCUCAUG- -5'
16324 5' -52.9 NC_004084.1 + 42515 0.73 0.45265
Target:  5'- gCGCAGAGAACUgCGCCcgcUGCGGGa--- -3'
miRNA:   3'- -GUGUCUCUUGA-GCGGu--ACGCCUcaug -5'
16324 5' -52.9 NC_004084.1 + 19211 0.75 0.333147
Target:  5'- gACAGAGAugUCGCCGUGCGu----- -3'
miRNA:   3'- gUGUCUCUugAGCGGUACGCcucaug -5'
16324 5' -52.9 NC_004084.1 + 21831 1.09 0.001659
Target:  5'- uCACAGAGAACUCGCCAUGCGGAGUACu -3'
miRNA:   3'- -GUGUCUCUUGAGCGGUACGCCUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.