Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16324 | 5' | -52.9 | NC_004084.1 | + | 42515 | 0.73 | 0.45265 |
Target: 5'- gCGCAGAGAACUgCGCCcgcUGCGGGa--- -3' miRNA: 3'- -GUGUCUCUUGA-GCGGu--ACGCCUcaug -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 17384 | 0.66 | 0.817733 |
Target: 5'- cCGguGAGGAuCUCGCCG-GCaGAGUGa -3' miRNA: 3'- -GUguCUCUU-GAGCGGUaCGcCUCAUg -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 45551 | 0.66 | 0.808158 |
Target: 5'- gGCGcGAGGAcCUCGaa--GCGGAGUACg -3' miRNA: 3'- gUGU-CUCUU-GAGCgguaCGCCUCAUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 6534 | 0.67 | 0.757625 |
Target: 5'- aCGCGGAGAAgUUcgauuucgacaGCUGUGUGGAGaGCg -3' miRNA: 3'- -GUGUCUCUUgAG-----------CGGUACGCCUCaUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 51109 | 0.67 | 0.757625 |
Target: 5'- aGCAGcgagaGGAGCUCGUCca--GGAGUACg -3' miRNA: 3'- gUGUC-----UCUUGAGCGGuacgCCUCAUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 53503 | 0.68 | 0.747069 |
Target: 5'- gACGGcGAAgUCGUCGUGCGGuAGacUGCg -3' miRNA: 3'- gUGUCuCUUgAGCGGUACGCC-UC--AUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 43778 | 0.7 | 0.625591 |
Target: 5'- gACuGGGcGCUCGCCG-GCGGAGa-- -3' miRNA: 3'- gUGuCUCuUGAGCGGUaCGCCUCaug -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 4810 | 0.66 | 0.817733 |
Target: 5'- gGCAGAGAagGCggGCCGgaucgGCGGGGa-- -3' miRNA: 3'- gUGUCUCU--UGagCGGUa----CGCCUCaug -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 36233 | 0.68 | 0.691605 |
Target: 5'- -uCGGAGAACUCGCCuacCGGgucgacguccucgAGUGCg -3' miRNA: 3'- guGUCUCUUGAGCGGuacGCC-------------UCAUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 30648 | 0.7 | 0.60315 |
Target: 5'- aCGCGaAGAACaCGCUGUgaGCGGAGUACu -3' miRNA: 3'- -GUGUcUCUUGaGCGGUA--CGCCUCAUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 15532 | 0.73 | 0.45265 |
Target: 5'- aGCuuuuGAGAGCuUCGCC-UGcCGGAGUGCc -3' miRNA: 3'- gUGu---CUCUUG-AGCGGuAC-GCCUCAUG- -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 19211 | 0.75 | 0.333147 |
Target: 5'- gACAGAGAugUCGCCGUGCGu----- -3' miRNA: 3'- gUGUCUCUugAGCGGUACGCcucaug -5' |
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16324 | 5' | -52.9 | NC_004084.1 | + | 21831 | 1.09 | 0.001659 |
Target: 5'- uCACAGAGAACUCGCCAUGCGGAGUACu -3' miRNA: 3'- -GUGUCUCUUGAGCGGUACGCCUCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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