miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16325 3' -52.9 NC_004084.1 + 11024 0.66 0.892215
Target:  5'- gUCGUCGCGcccugGAgcucgccgucgacgaCGCGGAcgaagggGCGGCCGc -3'
miRNA:   3'- -AGCAGCGCua---CUa--------------GUGCCU-------UGCUGGC- -5'
16325 3' -52.9 NC_004084.1 + 38764 0.66 0.892215
Target:  5'- aCGUC-CGAUGAcgCACG--ACGACCu -3'
miRNA:   3'- aGCAGcGCUACUa-GUGCcuUGCUGGc -5'
16325 3' -52.9 NC_004084.1 + 28652 0.66 0.892215
Target:  5'- cCGUCGCGAUGcAggACGGucauCGucucGCCGg -3'
miRNA:   3'- aGCAGCGCUAC-UagUGCCuu--GC----UGGC- -5'
16325 3' -52.9 NC_004084.1 + 3456 0.66 0.892215
Target:  5'- gUCGgaUCGCGAgcgccggggGAaUACGGAACGGCg- -3'
miRNA:   3'- -AGC--AGCGCUa--------CUaGUGCCUUGCUGgc -5'
16325 3' -52.9 NC_004084.1 + 5739 0.66 0.892215
Target:  5'- cUCGaUCGgGAUGAUCGCcucGACGACg- -3'
miRNA:   3'- -AGC-AGCgCUACUAGUGcc-UUGCUGgc -5'
16325 3' -52.9 NC_004084.1 + 5464 0.66 0.884946
Target:  5'- --cUCGCGAcGAUCACGacgacgccGACGGCCa -3'
miRNA:   3'- agcAGCGCUaCUAGUGCc-------UUGCUGGc -5'
16325 3' -52.9 NC_004084.1 + 21822 0.66 0.884946
Target:  5'- gCGUCGaCGGUGAggCGCuGGACGAUg- -3'
miRNA:   3'- aGCAGC-GCUACUa-GUGcCUUGCUGgc -5'
16325 3' -52.9 NC_004084.1 + 26014 0.66 0.884946
Target:  5'- cUCGUCGaCGGgaccGAaCGCGGAcuCGAUCGa -3'
miRNA:   3'- -AGCAGC-GCUa---CUaGUGCCUu-GCUGGC- -5'
16325 3' -52.9 NC_004084.1 + 51041 0.66 0.87742
Target:  5'- -gGUCGCaGGcggGAUCAccguCGGAGCGaACCGc -3'
miRNA:   3'- agCAGCG-CUa--CUAGU----GCCUUGC-UGGC- -5'
16325 3' -52.9 NC_004084.1 + 31288 0.66 0.87742
Target:  5'- aCGUCGCGuuggauacGAUCugGGAgaGCGAaaUCGc -3'
miRNA:   3'- aGCAGCGCua------CUAGugCCU--UGCU--GGC- -5'
16325 3' -52.9 NC_004084.1 + 31762 0.66 0.876654
Target:  5'- ---cCGCGAUGGaCGCGGuaaguacguccgaGACGGCCa -3'
miRNA:   3'- agcaGCGCUACUaGUGCC-------------UUGCUGGc -5'
16325 3' -52.9 NC_004084.1 + 19314 0.66 0.861626
Target:  5'- -gGUCGaCGAcGAUCgACGG-GCGACUGu -3'
miRNA:   3'- agCAGC-GCUaCUAG-UGCCuUGCUGGC- -5'
16325 3' -52.9 NC_004084.1 + 42305 0.66 0.861626
Target:  5'- aCGaUCgGCGAcGAUCGCG--ACGACCGu -3'
miRNA:   3'- aGC-AG-CGCUaCUAGUGCcuUGCUGGC- -5'
16325 3' -52.9 NC_004084.1 + 12578 0.66 0.861626
Target:  5'- aCGggcaaGCGAUGAUCGaGGAcGCGAUCa -3'
miRNA:   3'- aGCag---CGCUACUAGUgCCU-UGCUGGc -5'
16325 3' -52.9 NC_004084.1 + 23532 0.67 0.853371
Target:  5'- aUCGUCGCGAuggaggccgUGAUCGauuCGG-ACGAUa- -3'
miRNA:   3'- -AGCAGCGCU---------ACUAGU---GCCuUGCUGgc -5'
16325 3' -52.9 NC_004084.1 + 1367 0.67 0.853371
Target:  5'- cCGUCGUGAUcgGGaCGCGaaAGCGGCCGg -3'
miRNA:   3'- aGCAGCGCUA--CUaGUGCc-UUGCUGGC- -5'
16325 3' -52.9 NC_004084.1 + 45175 0.67 0.853371
Target:  5'- cCGaCGaCGGUGAgUACGGcAACGAUCGg -3'
miRNA:   3'- aGCaGC-GCUACUaGUGCC-UUGCUGGC- -5'
16325 3' -52.9 NC_004084.1 + 4301 0.67 0.844886
Target:  5'- aCGUCccgcCGGUGAUCGCGGGcgucguCGAguCCGg -3'
miRNA:   3'- aGCAGc---GCUACUAGUGCCUu-----GCU--GGC- -5'
16325 3' -52.9 NC_004084.1 + 44896 0.67 0.818144
Target:  5'- -gGUUuCGAUGAUCcCGGcGACGACCc -3'
miRNA:   3'- agCAGcGCUACUAGuGCC-UUGCUGGc -5'
16325 3' -52.9 NC_004084.1 + 38427 0.67 0.818144
Target:  5'- cCGUU-CGAUGAUCGCuGGGuCGGCCc -3'
miRNA:   3'- aGCAGcGCUACUAGUG-CCUuGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.