miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16325 5' -57.1 NC_004084.1 + 34398 0.66 0.650516
Target:  5'- uGCUcCCACGCaacuacgCCGCGgAUCUCCu--- -3'
miRNA:   3'- -CGGuGGUGCGa------GGCGC-UAGAGGcuaa -5'
16325 5' -57.1 NC_004084.1 + 8501 0.66 0.639661
Target:  5'- cGCCGCCGga-UCCaGCGAaggaaUCUCCGAg- -3'
miRNA:   3'- -CGGUGGUgcgAGG-CGCU-----AGAGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 34793 0.66 0.639661
Target:  5'- cGCuCACCGCG-UCCauuGCGGUCUgCGAc- -3'
miRNA:   3'- -CG-GUGGUGCgAGG---CGCUAGAgGCUaa -5'
16325 5' -57.1 NC_004084.1 + 53899 0.66 0.639661
Target:  5'- cGCCugCACGCgCUGCGAggcgaUCuCGAc- -3'
miRNA:   3'- -CGGugGUGCGaGGCGCUag---AG-GCUaa -5'
16325 5' -57.1 NC_004084.1 + 55075 0.66 0.622282
Target:  5'- gGCCGgCGCGCUCCucccccguccgagacGCGcgCUCCu--- -3'
miRNA:   3'- -CGGUgGUGCGAGG---------------CGCuaGAGGcuaa -5'
16325 5' -57.1 NC_004084.1 + 18601 0.66 0.61794
Target:  5'- cGCCAUCAUGaCUCUGCGGugggcucgaagUCgCCGAg- -3'
miRNA:   3'- -CGGUGGUGC-GAGGCGCU-----------AGaGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 2341 0.66 0.606009
Target:  5'- uGCCGCCAgagucguCGUUCCGCGucGUCcUCGAa- -3'
miRNA:   3'- -CGGUGGU-------GCGAGGCGC--UAGaGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 49334 0.66 0.596267
Target:  5'- cGCCcgguCgGCGUaccgCgGCGAUCUCCGAa- -3'
miRNA:   3'- -CGGu---GgUGCGa---GgCGCUAGAGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 55516 0.67 0.550154
Target:  5'- cGgCACCGCGUugaugaugggauccUCCGCGAUCgcgCUGGc- -3'
miRNA:   3'- -CgGUGGUGCG--------------AGGCGCUAGa--GGCUaa -5'
16325 5' -57.1 NC_004084.1 + 10242 0.67 0.542742
Target:  5'- gGUCGCCugGUgagUCGCGGUCggcgUCCGGa- -3'
miRNA:   3'- -CGGUGGugCGa--GGCGCUAG----AGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 44632 0.67 0.542742
Target:  5'- cGCgACCAaccggaCGCGAUCUCCGAg- -3'
miRNA:   3'- -CGgUGGUgcgag-GCGCUAGAGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 40862 0.69 0.46091
Target:  5'- cGUC-CCACGCUCCGCuGUCgUCGAc- -3'
miRNA:   3'- -CGGuGGUGCGAGGCGcUAGaGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 48704 0.69 0.430972
Target:  5'- aGCCGCCggcaucgGCGUcggccaacucaCCGCGGUCUCCGGc- -3'
miRNA:   3'- -CGGUGG-------UGCGa----------GGCGCUAGAGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 27002 0.7 0.413197
Target:  5'- cGCgGCCGCGUcgUCUGCGAcuUCgCCGAUa -3'
miRNA:   3'- -CGgUGGUGCG--AGGCGCU--AGaGGCUAa -5'
16325 5' -57.1 NC_004084.1 + 35953 0.71 0.35178
Target:  5'- cGCCACCACGCagccgUCGCGAgcgCccCCGAa- -3'
miRNA:   3'- -CGGUGGUGCGa----GGCGCUa--Ga-GGCUaa -5'
16325 5' -57.1 NC_004084.1 + 10840 0.71 0.319706
Target:  5'- cGCCACCGCGCUC-GCGAacgUCcUCGAa- -3'
miRNA:   3'- -CGGUGGUGCGAGgCGCU---AGaGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 53081 0.75 0.192187
Target:  5'- cGCCGCC-CGCUCgGCGAcgugaUCUUCGAg- -3'
miRNA:   3'- -CGGUGGuGCGAGgCGCU-----AGAGGCUaa -5'
16325 5' -57.1 NC_004084.1 + 21307 1.08 0.000853
Target:  5'- aGCCACCACGCUCCGCGAUCUCCGAUUg -3'
miRNA:   3'- -CGGUGGUGCGAGGCGCUAGAGGCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.