Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16326 | 3' | -51.3 | NC_004084.1 | + | 54342 | 0.66 | 0.924689 |
Target: 5'- ---cCUCGAUCAGGuuCCGcAUCUCcucgcGCCc -3' miRNA: 3'- uaaaGAGCUAGUCC--GGC-UAGAGc----UGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 51154 | 0.66 | 0.924689 |
Target: 5'- --aUCUCGGugUCGGuGUCGcUCUCGuCCu -3' miRNA: 3'- uaaAGAGCU--AGUC-CGGCuAGAGCuGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 44605 | 0.66 | 0.918588 |
Target: 5'- --aUCgcCGAgUGGGCCGAUCgccucggucgCGACCa -3' miRNA: 3'- uaaAGa-GCUaGUCCGGCUAGa---------GCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 36640 | 0.66 | 0.918588 |
Target: 5'- --cUCgCGAUCGuacGGCuccuCGAUCUCGACa -3' miRNA: 3'- uaaAGaGCUAGU---CCG----GCUAGAGCUGg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 9949 | 0.66 | 0.918588 |
Target: 5'- aGUUgCUCGGUCAGGagaUGAgcaUCGACa -3' miRNA: 3'- -UAAaGAGCUAGUCCg--GCUag-AGCUGg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 13123 | 0.66 | 0.918588 |
Target: 5'- ---cCUgGAguugCGGGCCGucgucguaCUCGACCu -3' miRNA: 3'- uaaaGAgCUa---GUCCGGCua------GAGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 33614 | 0.66 | 0.912199 |
Target: 5'- --gUCUCGAUCGGcGCaCGAUCa-GuCCu -3' miRNA: 3'- uaaAGAGCUAGUC-CG-GCUAGagCuGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 26067 | 0.66 | 0.912199 |
Target: 5'- ---gCUCGAUCGcGCgGAUgCUCGugCu -3' miRNA: 3'- uaaaGAGCUAGUcCGgCUA-GAGCugG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 3552 | 0.66 | 0.912199 |
Target: 5'- ---aCUCGAacuggCAGGUCGGUC-CGAUg -3' miRNA: 3'- uaaaGAGCUa----GUCCGGCUAGaGCUGg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 53270 | 0.66 | 0.905523 |
Target: 5'- ------aGAUCGGGCCGggCgacguccuggCGACCa -3' miRNA: 3'- uaaagagCUAGUCCGGCuaGa---------GCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 49872 | 0.66 | 0.905523 |
Target: 5'- ---aCUCGGUgAGGacguCGAUCUCGAg- -3' miRNA: 3'- uaaaGAGCUAgUCCg---GCUAGAGCUgg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 16544 | 0.67 | 0.886851 |
Target: 5'- --gUCUUGGcucucaacgcggcucUCGGGCCGAUCgguGCCg -3' miRNA: 3'- uaaAGAGCU---------------AGUCCGGCUAGagcUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 24793 | 0.67 | 0.883813 |
Target: 5'- -cUUCUCGAagAGGaCUGAUCgugCG-CCg -3' miRNA: 3'- uaAAGAGCUagUCC-GGCUAGa--GCuGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 9236 | 0.67 | 0.883813 |
Target: 5'- ---gCUCGAUCAGGgCGuccagcGUCUCGGg- -3' miRNA: 3'- uaaaGAGCUAGUCCgGC------UAGAGCUgg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 45808 | 0.67 | 0.87603 |
Target: 5'- --aUC-CGGUCAGGCCGGacaucguuccCUUGAUCg -3' miRNA: 3'- uaaAGaGCUAGUCCGGCUa---------GAGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 12115 | 0.67 | 0.87603 |
Target: 5'- --cUCUCGAUCAucCUGAcgggguUCUUGACCg -3' miRNA: 3'- uaaAGAGCUAGUccGGCU------AGAGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 18422 | 0.67 | 0.87603 |
Target: 5'- --aUUUgGA-CGGGCuCGAUCUCGAUa -3' miRNA: 3'- uaaAGAgCUaGUCCG-GCUAGAGCUGg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 58391 | 0.67 | 0.87603 |
Target: 5'- --aUCUCGGU--GGCCGAcacgacCUCGACUu -3' miRNA: 3'- uaaAGAGCUAguCCGGCUa-----GAGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 18268 | 0.67 | 0.875237 |
Target: 5'- -cUUCgaacCGGUCgacguugAGGCCGAUCaggccaccgUCGGCCu -3' miRNA: 3'- uaAAGa---GCUAG-------UCCGGCUAG---------AGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 13624 | 0.67 | 0.867983 |
Target: 5'- -----gUGGUCGGGaCCGucgugacuucccAUCUCGACCg -3' miRNA: 3'- uaaagaGCUAGUCC-GGC------------UAGAGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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