Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16326 | 3' | -51.3 | NC_004084.1 | + | 30356 | 0.68 | 0.833318 |
Target: 5'- ---cCUCGAggAGGCCGAguaaGACCu -3' miRNA: 3'- uaaaGAGCUagUCCGGCUagagCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 33614 | 0.66 | 0.912199 |
Target: 5'- --gUCUCGAUCGGcGCaCGAUCa-GuCCu -3' miRNA: 3'- uaaAGAGCUAGUC-CG-GCUAGagCuGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 35982 | 0.68 | 0.833318 |
Target: 5'- ---aCUCGAUCA-GCUcGUCUcCGACCg -3' miRNA: 3'- uaaaGAGCUAGUcCGGcUAGA-GCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 36640 | 0.66 | 0.918588 |
Target: 5'- --cUCgCGAUCGuacGGCuccuCGAUCUCGACa -3' miRNA: 3'- uaaAGaGCUAGU---CCG----GCUAGAGCUGg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 44605 | 0.66 | 0.918588 |
Target: 5'- --aUCgcCGAgUGGGCCGAUCgccucggucgCGACCa -3' miRNA: 3'- uaaAGa-GCUaGUCCGGCUAGa---------GCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 45808 | 0.67 | 0.87603 |
Target: 5'- --aUC-CGGUCAGGCCGGacaucguuccCUUGAUCg -3' miRNA: 3'- uaaAGaGCUAGUCCGGCUa---------GAGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 47133 | 0.7 | 0.721911 |
Target: 5'- -gUUCUCGcccucacuguUCAGGUCGAgCUCGAaCCg -3' miRNA: 3'- uaAAGAGCu---------AGUCCGGCUaGAGCU-GG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 49872 | 0.66 | 0.905523 |
Target: 5'- ---aCUCGGUgAGGacguCGAUCUCGAg- -3' miRNA: 3'- uaaaGAGCUAgUCCg---GCUAGAGCUgg -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 50257 | 0.68 | 0.833318 |
Target: 5'- ---gCUgGAgCGGGCUGGUCggcaCGACCa -3' miRNA: 3'- uaaaGAgCUaGUCCGGCUAGa---GCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 51154 | 0.66 | 0.924689 |
Target: 5'- --aUCUCGGugUCGGuGUCGcUCUCGuCCu -3' miRNA: 3'- uaaAGAGCU--AGUC-CGGCuAGAGCuGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 52207 | 0.68 | 0.842339 |
Target: 5'- --aUCUCGAccucgUCGGGCaGAUCaUCGAUUg -3' miRNA: 3'- uaaAGAGCU-----AGUCCGgCUAG-AGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 53270 | 0.66 | 0.905523 |
Target: 5'- ------aGAUCGGGCCGggCgacguccuggCGACCa -3' miRNA: 3'- uaaagagCUAGUCCGGCuaGa---------GCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 53646 | 0.7 | 0.729507 |
Target: 5'- --aUCagUGGUCAGGaaucggcguucgccCCGAUCUCGAUCa -3' miRNA: 3'- uaaAGa-GCUAGUCC--------------GGCUAGAGCUGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 54342 | 0.66 | 0.924689 |
Target: 5'- ---cCUCGAUCAGGuuCCGcAUCUCcucgcGCCc -3' miRNA: 3'- uaaaGAGCUAGUCC--GGC-UAGAGc----UGG- -5' |
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16326 | 3' | -51.3 | NC_004084.1 | + | 58391 | 0.67 | 0.87603 |
Target: 5'- --aUCUCGGU--GGCCGAcacgacCUCGACUu -3' miRNA: 3'- uaaAGAGCUAguCCGGCUa-----GAGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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