miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16327 3' -53.9 NC_004084.1 + 21469 0.66 0.830645
Target:  5'- cCGGcUCGCCCUCGaGGg---CGGCGa- -3'
miRNA:   3'- -GCU-AGCGGGAGCaUCaugaGCCGUac -5'
16327 3' -53.9 NC_004084.1 + 46555 0.66 0.783202
Target:  5'- uGAU-GCCCUgGUcGG-ACUCGGCAUc -3'
miRNA:   3'- gCUAgCGGGAgCA-UCaUGAGCCGUAc -5'
16327 3' -53.9 NC_004084.1 + 38839 0.66 0.783202
Target:  5'- -cGUCGUCCUCGUGGU-CUgGGaCGUc -3'
miRNA:   3'- gcUAGCGGGAGCAUCAuGAgCC-GUAc -5'
16327 3' -53.9 NC_004084.1 + 12753 0.67 0.773199
Target:  5'- uCGA-CGCCgaccguCUCGUcGUugUCGGCAUc -3'
miRNA:   3'- -GCUaGCGG------GAGCAuCAugAGCCGUAc -5'
16327 3' -53.9 NC_004084.1 + 7000 0.67 0.773199
Target:  5'- gCGuGUCGCCCUCGaAGgcCUcgaCGGCGUc -3'
miRNA:   3'- -GC-UAGCGGGAGCaUCauGA---GCCGUAc -5'
16327 3' -53.9 NC_004084.1 + 50451 0.67 0.742358
Target:  5'- --cUCGCCCUCGUccUGCggUCGGCGg- -3'
miRNA:   3'- gcuAGCGGGAGCAucAUG--AGCCGUac -5'
16327 3' -53.9 NC_004084.1 + 40339 0.68 0.688878
Target:  5'- aGAUCGUCCUCGaAGgg--CGGCAc- -3'
miRNA:   3'- gCUAGCGGGAGCaUCaugaGCCGUac -5'
16327 3' -53.9 NC_004084.1 + 10432 0.68 0.677973
Target:  5'- uCGA-CGUCCUCGUgcaucccgcagaAGUACUCGaGCGg- -3'
miRNA:   3'- -GCUaGCGGGAGCA------------UCAUGAGC-CGUac -5'
16327 3' -53.9 NC_004084.1 + 49327 0.69 0.667024
Target:  5'- uCGAcaUCGCCCggUCGgcGUACcgCGGCGa- -3'
miRNA:   3'- -GCU--AGCGGG--AGCauCAUGa-GCCGUac -5'
16327 3' -53.9 NC_004084.1 + 37888 0.69 0.623007
Target:  5'- gGAUCG-CCUCGUAGUcacCUCGGUc-- -3'
miRNA:   3'- gCUAGCgGGAGCAUCAu--GAGCCGuac -5'
16327 3' -53.9 NC_004084.1 + 18304 0.7 0.601006
Target:  5'- -cGUCGgCCUCGUAGgACUCgaagccgcuGGCGUGg -3'
miRNA:   3'- gcUAGCgGGAGCAUCaUGAG---------CCGUAC- -5'
16327 3' -53.9 NC_004084.1 + 47699 0.7 0.579112
Target:  5'- gGAgCGCCgaaCUCGUGGUGCUCcGCGUa -3'
miRNA:   3'- gCUaGCGG---GAGCAUCAUGAGcCGUAc -5'
16327 3' -53.9 NC_004084.1 + 42657 0.7 0.579112
Target:  5'- aGAUCGCCgUCG-AGagccugaaUACUCGGCGc- -3'
miRNA:   3'- gCUAGCGGgAGCaUC--------AUGAGCCGUac -5'
16327 3' -53.9 NC_004084.1 + 13753 0.7 0.568227
Target:  5'- uCGGcUCGCCCUCGaGGUcgcGCUgGGCGg- -3'
miRNA:   3'- -GCU-AGCGGGAGCaUCA---UGAgCCGUac -5'
16327 3' -53.9 NC_004084.1 + 19360 1.09 0.001511
Target:  5'- cCGAUCGCCCUCGUAGUACUCGGCAUGa -3'
miRNA:   3'- -GCUAGCGGGAGCAUCAUGAGCCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.