miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16328 5' -56.5 NC_004084.1 + 40845 0.66 0.70464
Target:  5'- aGgUCGAGGUCcCCGAacUGGCCGuCg -3'
miRNA:   3'- cCgAGCUUCAGcGGCUcaACCGGCuG- -5'
16328 5' -56.5 NC_004084.1 + 36144 0.66 0.683335
Target:  5'- cGUUCGAGcGUUGCUGAGUgacGCCG-Ca -3'
miRNA:   3'- cCGAGCUU-CAGCGGCUCAac-CGGCuG- -5'
16328 5' -56.5 NC_004084.1 + 40164 0.66 0.683335
Target:  5'- cGGUUCGAAGaCGUcauCGGGaUGGCCaACu -3'
miRNA:   3'- -CCGAGCUUCaGCG---GCUCaACCGGcUG- -5'
16328 5' -56.5 NC_004084.1 + 5686 0.66 0.683335
Target:  5'- aGGUcgUCGAGGUcCGCUGGGUUGaGuUCGAg -3'
miRNA:   3'- -CCG--AGCUUCA-GCGGCUCAAC-C-GGCUg -5'
16328 5' -56.5 NC_004084.1 + 36501 0.66 0.683335
Target:  5'- -cCUCGAcGUCGaacucgaUGAGgaGGCCGACc -3'
miRNA:   3'- ccGAGCUuCAGCg------GCUCaaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 18316 0.66 0.682265
Target:  5'- aGGaCUCGAAGcCGCUGGcgugggcGUUGGauucgaccaucCCGACg -3'
miRNA:   3'- -CC-GAGCUUCaGCGGCU-------CAACC-----------GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 42399 0.66 0.672607
Target:  5'- aGGCccgCGcAGUCacggGCgGAGgUGGCCGAUg -3'
miRNA:   3'- -CCGa--GCuUCAG----CGgCUCaACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 52867 0.66 0.672607
Target:  5'- uGCUCGAgcggugccgaggGGUCGCCuGA--UGGUCGAg -3'
miRNA:   3'- cCGAGCU------------UCAGCGG-CUcaACCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 54539 0.66 0.661841
Target:  5'- cGCUUGAAGaugaguucguUCGCgGGGUUGGacaCCGAg -3'
miRNA:   3'- cCGAGCUUC----------AGCGgCUCAACC---GGCUg -5'
16328 5' -56.5 NC_004084.1 + 7477 0.66 0.651049
Target:  5'- cGGCgacggCGAAGgCGagaCGAGcaagucGGCCGACg -3'
miRNA:   3'- -CCGa----GCUUCaGCg--GCUCaa----CCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 46497 0.66 0.649968
Target:  5'- uGGUcgCGAcgucgccGGUCGCCGAGUUGa-UGACg -3'
miRNA:   3'- -CCGa-GCU-------UCAGCGGCUCAACcgGCUG- -5'
16328 5' -56.5 NC_004084.1 + 1603 0.66 0.649968
Target:  5'- cGGCUgGGAGcUCuGCucgaugaacuccuCGAGgaGGCCGACc -3'
miRNA:   3'- -CCGAgCUUC-AG-CG-------------GCUCaaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 36085 0.66 0.646727
Target:  5'- cGCgaCGAGGUCGCCGucuccuacgagUGGCaCGGCc -3'
miRNA:   3'- cCGa-GCUUCAGCGGCuca--------ACCG-GCUG- -5'
16328 5' -56.5 NC_004084.1 + 55414 0.67 0.64024
Target:  5'- cGGCaUGA--UCGCCGGGggGGuCUGGCu -3'
miRNA:   3'- -CCGaGCUucAGCGGCUCaaCC-GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 18892 0.67 0.629424
Target:  5'- aGGcCUgGGAGUgguaCGCCGAGcaagGGCgCGGCu -3'
miRNA:   3'- -CC-GAgCUUCA----GCGGCUCaa--CCG-GCUG- -5'
16328 5' -56.5 NC_004084.1 + 43914 0.67 0.61861
Target:  5'- gGGCcaCGAA--C-CCGAGUUGGCCGAg -3'
miRNA:   3'- -CCGa-GCUUcaGcGGCUCAACCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 56605 0.67 0.607807
Target:  5'- cGGCgUCGucgccGGUCGgCGAGUUcGCCGGa -3'
miRNA:   3'- -CCG-AGCu----UCAGCgGCUCAAcCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 12901 0.67 0.586272
Target:  5'- cGGCguccUCGGAGUgGCCGAcc-GGcCCGGCc -3'
miRNA:   3'- -CCG----AGCUUCAgCGGCUcaaCC-GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 5324 0.68 0.575555
Target:  5'- gGGCcgacUCGAAgaucacGUCGCCGAGcgGG-CGGCg -3'
miRNA:   3'- -CCG----AGCUU------CAGCGGCUCaaCCgGCUG- -5'
16328 5' -56.5 NC_004084.1 + 45522 0.68 0.575555
Target:  5'- cGGCcacucCGAGGaCGCCGGGaugGGuuGGCg -3'
miRNA:   3'- -CCGa----GCUUCaGCGGCUCaa-CCggCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.