miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16328 5' -56.5 NC_004084.1 + 37548 0.68 0.554265
Target:  5'- cGCUCGAuuccaUCGCCGGcgcGGUCGACg -3'
miRNA:   3'- cCGAGCUuc---AGCGGCUcaaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 36230 0.68 0.533214
Target:  5'- uGCUCGGAGaacUCGCCuaccgGGUCGACg -3'
miRNA:   3'- cCGAGCUUC---AGCGGcucaaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 1045 0.68 0.533214
Target:  5'- cGCUCGAGuUCGCCGA---GGUCGAa -3'
miRNA:   3'- cCGAGCUUcAGCGGCUcaaCCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 32108 0.69 0.522795
Target:  5'- aGCUCGAGcagcucGUCGUCGAGcaccaggaGGUCGACu -3'
miRNA:   3'- cCGAGCUU------CAGCGGCUCaa------CCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 2525 0.69 0.472001
Target:  5'- cGGCggaUCGucGUCGCaCGGG-UGGCCGcuGCg -3'
miRNA:   3'- -CCG---AGCuuCAGCG-GCUCaACCGGC--UG- -5'
16328 5' -56.5 NC_004084.1 + 22967 0.7 0.46214
Target:  5'- cGCgaCGAGGcCGaCCGAGUccUGGUCGACc -3'
miRNA:   3'- cCGa-GCUUCaGC-GGCUCA--ACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 57737 0.7 0.452387
Target:  5'- cGCUCGAGGaCGUCGAcgaaGCCGACa -3'
miRNA:   3'- cCGAGCUUCaGCGGCUcaacCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 30106 0.7 0.414546
Target:  5'- aGCUcCGGAcGUCGCUGGGgagcgGGCCGGg -3'
miRNA:   3'- cCGA-GCUU-CAGCGGCUCaa---CCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 43173 0.7 0.414546
Target:  5'- cGCguucaCGGAGUCGcCCGAGgaGGUgGACg -3'
miRNA:   3'- cCGa----GCUUCAGC-GGCUCaaCCGgCUG- -5'
16328 5' -56.5 NC_004084.1 + 55036 0.7 0.412706
Target:  5'- uGCUCGAGGagcuccgccaucuUCaCCGGGUugaacggUGGCCGGCg -3'
miRNA:   3'- cCGAGCUUC-------------AGcGGCUCA-------ACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 30320 0.71 0.378714
Target:  5'- aGGCgcacccCGAAccguugaccGUCGgCGAGgUGGCCGACg -3'
miRNA:   3'- -CCGa-----GCUU---------CAGCgGCUCaACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 13781 0.71 0.378714
Target:  5'- gGGCUCGGAGaucgCGUCcGGUUGGUCG-Cg -3'
miRNA:   3'- -CCGAGCUUCa---GCGGcUCAACCGGCuG- -5'
16328 5' -56.5 NC_004084.1 + 45413 0.71 0.370086
Target:  5'- uGCUCGAGGUCGUCGAucgaGCCGGa -3'
miRNA:   3'- cCGAGCUUCAGCGGCUcaacCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 35325 0.71 0.369231
Target:  5'- uGGCUaucCGAGGUCGCCGAcGUccaccucgucgcgUcGCCGGCg -3'
miRNA:   3'- -CCGA---GCUUCAGCGGCU-CA-------------AcCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 9074 0.72 0.34502
Target:  5'- cGUUCGGAGaUCGCCGcGGUacGCCGACc -3'
miRNA:   3'- cCGAGCUUC-AGCGGC-UCAacCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 42014 0.72 0.33694
Target:  5'- uGCUCGAGuggccGUCGCgagCGAGgcGGUCGACa -3'
miRNA:   3'- cCGAGCUU-----CAGCG---GCUCaaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 51160 0.72 0.321196
Target:  5'- aGGCgaUCGAgacGGUCGCCGAGcacGcGCCGAUc -3'
miRNA:   3'- -CCG--AGCU---UCAGCGGCUCaa-C-CGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 53107 0.73 0.277302
Target:  5'- aGGCacucgaCGGAGcCGCCGAGUggaUGGCgGACc -3'
miRNA:   3'- -CCGa-----GCUUCaGCGGCUCA---ACCGgCUG- -5'
16328 5' -56.5 NC_004084.1 + 44586 0.75 0.238328
Target:  5'- uGGCUgccacgcaGAGGucaUCGCCGAGUgGGCCGAUc -3'
miRNA:   3'- -CCGAg-------CUUC---AGCGGCUCAaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 10725 0.75 0.214968
Target:  5'- cGGCUCGggGUCGguuuCCG-GUUGGggauCCGGCu -3'
miRNA:   3'- -CCGAGCuuCAGC----GGCuCAACC----GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.