miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16328 5' -56.5 NC_004084.1 + 1045 0.68 0.533214
Target:  5'- cGCUCGAGuUCGCCGA---GGUCGAa -3'
miRNA:   3'- cCGAGCUUcAGCGGCUcaaCCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 1586 0.77 0.160667
Target:  5'- aGGCUCGAGGcccgCGCUG-GUUGGCaGACa -3'
miRNA:   3'- -CCGAGCUUCa---GCGGCuCAACCGgCUG- -5'
16328 5' -56.5 NC_004084.1 + 1603 0.66 0.649968
Target:  5'- cGGCUgGGAGcUCuGCucgaugaacuccuCGAGgaGGCCGACc -3'
miRNA:   3'- -CCGAgCUUC-AG-CG-------------GCUCaaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 2525 0.69 0.472001
Target:  5'- cGGCggaUCGucGUCGCaCGGG-UGGCCGcuGCg -3'
miRNA:   3'- -CCG---AGCuuCAGCG-GCUCaACCGGC--UG- -5'
16328 5' -56.5 NC_004084.1 + 5324 0.68 0.575555
Target:  5'- gGGCcgacUCGAAgaucacGUCGCCGAGcgGG-CGGCg -3'
miRNA:   3'- -CCG----AGCUU------CAGCGGCUCaaCCgGCUG- -5'
16328 5' -56.5 NC_004084.1 + 5686 0.66 0.683335
Target:  5'- aGGUcgUCGAGGUcCGCUGGGUUGaGuUCGAg -3'
miRNA:   3'- -CCG--AGCUUCA-GCGGCUCAAC-C-GGCUg -5'
16328 5' -56.5 NC_004084.1 + 7477 0.66 0.651049
Target:  5'- cGGCgacggCGAAGgCGagaCGAGcaagucGGCCGACg -3'
miRNA:   3'- -CCGa----GCUUCaGCg--GCUCaa----CCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 9074 0.72 0.34502
Target:  5'- cGUUCGGAGaUCGCCGcGGUacGCCGACc -3'
miRNA:   3'- cCGAGCUUC-AGCGGC-UCAacCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 9690 0.75 0.209444
Target:  5'- uGGCccgcCGGAGaccgCGgUGAGUUGGCCGACg -3'
miRNA:   3'- -CCGa---GCUUCa---GCgGCUCAACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 10235 0.77 0.174115
Target:  5'- cGCUUGAGGUCGCCugguGAGUcgcGGUCGGCg -3'
miRNA:   3'- cCGAGCUUCAGCGG----CUCAa--CCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 10725 0.75 0.214968
Target:  5'- cGGCUCGggGUCGguuuCCG-GUUGGggauCCGGCu -3'
miRNA:   3'- -CCGAGCuuCAGC----GGCuCAACC----GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 12901 0.67 0.586272
Target:  5'- cGGCguccUCGGAGUgGCCGAcc-GGcCCGGCc -3'
miRNA:   3'- -CCG----AGCUUCAgCGGCUcaaCC-GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 13781 0.71 0.378714
Target:  5'- gGGCUCGGAGaucgCGUCcGGUUGGUCG-Cg -3'
miRNA:   3'- -CCGAGCUUCa---GCGGcUCAACCGGCuG- -5'
16328 5' -56.5 NC_004084.1 + 18228 0.8 0.100798
Target:  5'- aGGUgaaCGAGGUCGCCgGAGUUGGCCa-- -3'
miRNA:   3'- -CCGa--GCUUCAGCGG-CUCAACCGGcug -5'
16328 5' -56.5 NC_004084.1 + 18316 0.66 0.682265
Target:  5'- aGGaCUCGAAGcCGCUGGcgugggcGUUGGauucgaccaucCCGACg -3'
miRNA:   3'- -CC-GAGCUUCaGCGGCU-------CAACC-----------GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 18621 1.1 0.000717
Target:  5'- gGGCUCGAAGUCGCCGAGUUGGCCGACc -3'
miRNA:   3'- -CCGAGCUUCAGCGGCUCAACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 18892 0.67 0.629424
Target:  5'- aGGcCUgGGAGUgguaCGCCGAGcaagGGCgCGGCu -3'
miRNA:   3'- -CC-GAgCUUCA----GCGGCUCaa--CCG-GCUG- -5'
16328 5' -56.5 NC_004084.1 + 22967 0.7 0.46214
Target:  5'- cGCgaCGAGGcCGaCCGAGUccUGGUCGACc -3'
miRNA:   3'- cCGa-GCUUCaGC-GGCUCA--ACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 30106 0.7 0.414546
Target:  5'- aGCUcCGGAcGUCGCUGGGgagcgGGCCGGg -3'
miRNA:   3'- cCGA-GCUU-CAGCGGCUCaa---CCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 30320 0.71 0.378714
Target:  5'- aGGCgcacccCGAAccguugaccGUCGgCGAGgUGGCCGACg -3'
miRNA:   3'- -CCGa-----GCUU---------CAGCgGCUCaACCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.