miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16328 5' -56.5 NC_004084.1 + 40164 0.66 0.683335
Target:  5'- cGGUUCGAAGaCGUcauCGGGaUGGCCaACu -3'
miRNA:   3'- -CCGAGCUUCaGCG---GCUCaACCGGcUG- -5'
16328 5' -56.5 NC_004084.1 + 5324 0.68 0.575555
Target:  5'- gGGCcgacUCGAAgaucacGUCGCCGAGcgGG-CGGCg -3'
miRNA:   3'- -CCG----AGCUU------CAGCGGCUCaaCCgGCUG- -5'
16328 5' -56.5 NC_004084.1 + 43914 0.67 0.61861
Target:  5'- gGGCcaCGAA--C-CCGAGUUGGCCGAg -3'
miRNA:   3'- -CCGa-GCUUcaGcGGCUCAACCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 18892 0.67 0.629424
Target:  5'- aGGcCUgGGAGUgguaCGCCGAGcaagGGCgCGGCu -3'
miRNA:   3'- -CC-GAgCUUCA----GCGGCUCaa--CCG-GCUG- -5'
16328 5' -56.5 NC_004084.1 + 55414 0.67 0.64024
Target:  5'- cGGCaUGA--UCGCCGGGggGGuCUGGCu -3'
miRNA:   3'- -CCGaGCUucAGCGGCUCaaCC-GGCUG- -5'
16328 5' -56.5 NC_004084.1 + 36085 0.66 0.646727
Target:  5'- cGCgaCGAGGUCGCCGucuccuacgagUGGCaCGGCc -3'
miRNA:   3'- cCGa-GCUUCAGCGGCuca--------ACCG-GCUG- -5'
16328 5' -56.5 NC_004084.1 + 7477 0.66 0.651049
Target:  5'- cGGCgacggCGAAGgCGagaCGAGcaagucGGCCGACg -3'
miRNA:   3'- -CCGa----GCUUCaGCg--GCUCaa----CCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 42399 0.66 0.672607
Target:  5'- aGGCccgCGcAGUCacggGCgGAGgUGGCCGAUg -3'
miRNA:   3'- -CCGa--GCuUCAG----CGgCUCaACCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 36144 0.66 0.683335
Target:  5'- cGUUCGAGcGUUGCUGAGUgacGCCG-Ca -3'
miRNA:   3'- cCGAGCUU-CAGCGGCUCAac-CGGCuG- -5'
16328 5' -56.5 NC_004084.1 + 45522 0.68 0.575555
Target:  5'- cGGCcacucCGAGGaCGCCGGGaugGGuuGGCg -3'
miRNA:   3'- -CCGa----GCUUCaGCGGCUCaa-CCggCUG- -5'
16328 5' -56.5 NC_004084.1 + 32108 0.69 0.522795
Target:  5'- aGCUCGAGcagcucGUCGUCGAGcaccaggaGGUCGACu -3'
miRNA:   3'- cCGAGCUU------CAGCGGCUCaa------CCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 2525 0.69 0.472001
Target:  5'- cGGCggaUCGucGUCGCaCGGG-UGGCCGcuGCg -3'
miRNA:   3'- -CCG---AGCuuCAGCG-GCUCaACCGGC--UG- -5'
16328 5' -56.5 NC_004084.1 + 44586 0.75 0.238328
Target:  5'- uGGCUgccacgcaGAGGucaUCGCCGAGUgGGCCGAUc -3'
miRNA:   3'- -CCGAg-------CUUC---AGCGGCUCAaCCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 53107 0.73 0.277302
Target:  5'- aGGCacucgaCGGAGcCGCCGAGUggaUGGCgGACc -3'
miRNA:   3'- -CCGa-----GCUUCaGCGGCUCA---ACCGgCUG- -5'
16328 5' -56.5 NC_004084.1 + 51160 0.72 0.321196
Target:  5'- aGGCgaUCGAgacGGUCGCCGAGcacGcGCCGAUc -3'
miRNA:   3'- -CCG--AGCU---UCAGCGGCUCaa-C-CGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 35325 0.71 0.369231
Target:  5'- uGGCUaucCGAGGUCGCCGAcGUccaccucgucgcgUcGCCGGCg -3'
miRNA:   3'- -CCGA---GCUUCAGCGGCU-CA-------------AcCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 30106 0.7 0.414546
Target:  5'- aGCUcCGGAcGUCGCUGGGgagcgGGCCGGg -3'
miRNA:   3'- cCGA-GCUU-CAGCGGCUCaa---CCGGCUg -5'
16328 5' -56.5 NC_004084.1 + 43173 0.7 0.414546
Target:  5'- cGCguucaCGGAGUCGcCCGAGgaGGUgGACg -3'
miRNA:   3'- cCGa----GCUUCAGC-GGCUCaaCCGgCUG- -5'
16328 5' -56.5 NC_004084.1 + 57737 0.7 0.452387
Target:  5'- cGCUCGAGGaCGUCGAcgaaGCCGACa -3'
miRNA:   3'- cCGAGCUUCaGCGGCUcaacCGGCUG- -5'
16328 5' -56.5 NC_004084.1 + 22967 0.7 0.46214
Target:  5'- cGCgaCGAGGcCGaCCGAGUccUGGUCGACc -3'
miRNA:   3'- cCGa-GCUUCaGC-GGCUCA--ACCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.