miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1633 3' -53.8 NC_001347.2 + 193062 0.66 0.992461
Target:  5'- cCUGUGGAUcgUCGCGGacugccggcaUG-UCCGG-CCg -3'
miRNA:   3'- -GGCACCUA--AGUGCC----------ACaAGGCCuGGg -5'
1633 3' -53.8 NC_001347.2 + 79853 0.66 0.992461
Target:  5'- aCCGUGGAcggUugGcccGUGggCCuGGGCCUg -3'
miRNA:   3'- -GGCACCUaa-GugC---CACaaGG-CCUGGG- -5'
1633 3' -53.8 NC_001347.2 + 1404 0.66 0.992461
Target:  5'- aCCGUGGug-CACgaGGUGgaccCCGcagccGACCCg -3'
miRNA:   3'- -GGCACCuaaGUG--CCACaa--GGC-----CUGGG- -5'
1633 3' -53.8 NC_001347.2 + 63107 0.66 0.992361
Target:  5'- gCCGUGGccgcCGCGGccgccgcUGUggCCGGaguGCCCg -3'
miRNA:   3'- -GGCACCuaa-GUGCC-------ACAa-GGCC---UGGG- -5'
1633 3' -53.8 NC_001347.2 + 136059 0.66 0.988996
Target:  5'- cCCGgaUGGugcUCcaggGCGGUGggaCGGGCCCg -3'
miRNA:   3'- -GGC--ACCua-AG----UGCCACaagGCCUGGG- -5'
1633 3' -53.8 NC_001347.2 + 56054 0.66 0.988591
Target:  5'- aCGUGGGaucucCACGcgaaucucggguacGUGUUCCGGACa- -3'
miRNA:   3'- gGCACCUaa---GUGC--------------CACAAGGCCUGgg -5'
1633 3' -53.8 NC_001347.2 + 29165 0.67 0.9876
Target:  5'- uCUGUGGAcccugCGCGGgaaccugUCCGuGCCCa -3'
miRNA:   3'- -GGCACCUaa---GUGCCaca----AGGCcUGGG- -5'
1633 3' -53.8 NC_001347.2 + 84378 0.67 0.986071
Target:  5'- gCGcGGAgucCugGGUGUgUCGGGCCg -3'
miRNA:   3'- gGCaCCUaa-GugCCACAaGGCCUGGg -5'
1633 3' -53.8 NC_001347.2 + 197159 0.67 0.986071
Target:  5'- cCCG-GGGcccuCGGUGcgcuaCCGGGCCCa -3'
miRNA:   3'- -GGCaCCUaaguGCCACaa---GGCCUGGG- -5'
1633 3' -53.8 NC_001347.2 + 30538 0.67 0.982774
Target:  5'- aCGUcGGGacgauauaaagaggCACGGUGUUUCGGcuCCCg -3'
miRNA:   3'- gGCA-CCUaa------------GUGCCACAAGGCCu-GGG- -5'
1633 3' -53.8 NC_001347.2 + 155518 0.69 0.954814
Target:  5'- aCGUGGAUUCucCGGUGccgaCGcGACCg -3'
miRNA:   3'- gGCACCUAAGu-GCCACaag-GC-CUGGg -5'
1633 3' -53.8 NC_001347.2 + 59460 0.69 0.946875
Target:  5'- -gGUGGAUgcggUGCGGUGUcgcCUGGGCaCCa -3'
miRNA:   3'- ggCACCUAa---GUGCCACAa--GGCCUG-GG- -5'
1633 3' -53.8 NC_001347.2 + 179301 0.7 0.938067
Target:  5'- aCG-GGA--CACGGUGUUUCGGuCCg -3'
miRNA:   3'- gGCaCCUaaGUGCCACAAGGCCuGGg -5'
1633 3' -53.8 NC_001347.2 + 850 0.7 0.933332
Target:  5'- -aGUGGAcgUCGgaGGUG-UCCGGcGCCCa -3'
miRNA:   3'- ggCACCUa-AGUg-CCACaAGGCC-UGGG- -5'
1633 3' -53.8 NC_001347.2 + 147907 0.71 0.917794
Target:  5'- gCCGUGGGUggCGCGGUGgccUCCGuGGUCg -3'
miRNA:   3'- -GGCACCUAa-GUGCCACa--AGGC-CUGGg -5'
1633 3' -53.8 NC_001347.2 + 92794 0.71 0.893986
Target:  5'- aCGgcccGAUacUCGCGGUGUUCCGG-CUCu -3'
miRNA:   3'- gGCac--CUA--AGUGCCACAAGGCCuGGG- -5'
1633 3' -53.8 NC_001347.2 + 39356 0.74 0.785883
Target:  5'- cCCGcgGGGUUCuaccCGGUGgacgCCGuGGCCCg -3'
miRNA:   3'- -GGCa-CCUAAGu---GCCACaa--GGC-CUGGG- -5'
1633 3' -53.8 NC_001347.2 + 134933 1.13 0.005195
Target:  5'- cCCGUGGAUUCACGGUGUUCCGGACCCc -3'
miRNA:   3'- -GGCACCUAAGUGCCACAAGGCCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.