miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1633 5' -56.5 NC_001347.2 + 190488 0.66 0.937495
Target:  5'- uGGGGGUGcccugcgggaucacGAugGAACGCGUGcGcGUCCACa -3'
miRNA:   3'- -UUCCCAC--------------CU--UUUGCGCAC-CuCGGGUG- -5'
1633 5' -56.5 NC_001347.2 + 35690 0.66 0.934115
Target:  5'- --cGG-GGAAGACGCGcuccggcccUGGAaGUCCACg -3'
miRNA:   3'- uucCCaCCUUUUGCGC---------ACCU-CGGGUG- -5'
1633 5' -56.5 NC_001347.2 + 109788 0.66 0.934115
Target:  5'- ----uUGGAAGGCGUaUGGcAGCCCGCu -3'
miRNA:   3'- uucccACCUUUUGCGcACC-UCGGGUG- -5'
1633 5' -56.5 NC_001347.2 + 155548 0.66 0.934115
Target:  5'- --uGGUGaucgacGAGGACGC--GGAGCCCGCg -3'
miRNA:   3'- uucCCAC------CUUUUGCGcaCCUCGGGUG- -5'
1633 5' -56.5 NC_001347.2 + 151344 0.66 0.923832
Target:  5'- cAGGcucUGGu-GGCGCGUGG-GCCCAg -3'
miRNA:   3'- uUCCc--ACCuuUUGCGCACCuCGGGUg -5'
1633 5' -56.5 NC_001347.2 + 53414 0.67 0.900495
Target:  5'- cAGcGUGGAAGACGCcaagauuuuUGGAGCgCACa -3'
miRNA:   3'- uUCcCACCUUUUGCGc--------ACCUCGgGUG- -5'
1633 5' -56.5 NC_001347.2 + 171786 0.67 0.873564
Target:  5'- -uGGGUaGAGAGCGCGcUGGAaaaacugcGUCCGCu -3'
miRNA:   3'- uuCCCAcCUUUUGCGC-ACCU--------CGGGUG- -5'
1633 5' -56.5 NC_001347.2 + 182169 0.67 0.873564
Target:  5'- -cGGGUcccuGGAAGCGUGUGuGGGCCgGCc -3'
miRNA:   3'- uuCCCAc---CUUUUGCGCAC-CUCGGgUG- -5'
1633 5' -56.5 NC_001347.2 + 194037 0.69 0.81691
Target:  5'- cAGGGgcuucguGCGCGUGGGGCUgGCg -3'
miRNA:   3'- uUCCCaccuuu-UGCGCACCUCGGgUG- -5'
1633 5' -56.5 NC_001347.2 + 188620 0.72 0.667538
Target:  5'- gGAGGGUccgucgGGAcAGCGCGUGGGacgugaggccGCUCACg -3'
miRNA:   3'- -UUCCCA------CCUuUUGCGCACCU----------CGGGUG- -5'
1633 5' -56.5 NC_001347.2 + 155329 0.72 0.637356
Target:  5'- -cGGG-GGAAgaaacGugGUGUGGGGCCCGu -3'
miRNA:   3'- uuCCCaCCUU-----UugCGCACCUCGGGUg -5'
1633 5' -56.5 NC_001347.2 + 140591 0.75 0.489572
Target:  5'- cGGGGGUGGuggacGAGACGUGagcgGGGGCCCGa -3'
miRNA:   3'- -UUCCCACC-----UUUUGCGCa---CCUCGGGUg -5'
1633 5' -56.5 NC_001347.2 + 134967 1.08 0.004108
Target:  5'- aAAGGGUGGAAAACGCGUGGAGCCCACg -3'
miRNA:   3'- -UUCCCACCUUUUGCGCACCUCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.