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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16330 | 3' | -52.6 | NC_004084.1 | + | 8195 | 0.66 | 0.886158 |
Target: 5'- -aGUGgGGUUCgCGGAugGCGUCGAg--- -3' miRNA: 3'- ugCACaCCAAG-GCCU--UGCAGCUagag -5' |
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16330 | 3' | -52.6 | NC_004084.1 | + | 49488 | 0.66 | 0.862645 |
Target: 5'- cGCGcUGaGGUguaCCGGuACGUCGA-CUCg -3' miRNA: 3'- -UGC-ACaCCAa--GGCCuUGCAGCUaGAG- -5' |
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16330 | 3' | -52.6 | NC_004084.1 | + | 30912 | 0.67 | 0.818703 |
Target: 5'- ---cGUGGUccUCCuGGAagACGUCGAUCg- -3' miRNA: 3'- ugcaCACCA--AGG-CCU--UGCAGCUAGag -5' |
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16330 | 3' | -52.6 | NC_004084.1 | + | 38848 | 0.68 | 0.799669 |
Target: 5'- ---cGUGG-UCUGGGACGUCGucCUCg -3' miRNA: 3'- ugcaCACCaAGGCCUUGCAGCuaGAG- -5' |
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16330 | 3' | -52.6 | NC_004084.1 | + | 17545 | 1.11 | 0.001775 |
Target: 5'- gACGUGUGGUUCCGGAACGUCGAUCUCg -3' miRNA: 3'- -UGCACACCAAGGCCUUGCAGCUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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