miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16330 5' -57.6 NC_004084.1 + 10970 0.66 0.661896
Target:  5'- -cGACCUCGACCcuUCUGG-AC-UGGAg -3'
miRNA:   3'- ccCUGGAGCUGG--AGGCCuUGcACCUg -5'
16330 5' -57.6 NC_004084.1 + 7237 0.66 0.640639
Target:  5'- -cGACCUCGACgaUCGGcGCGUGcucGGCg -3'
miRNA:   3'- ccCUGGAGCUGgaGGCCuUGCAC---CUG- -5'
16330 5' -57.6 NC_004084.1 + 50332 0.66 0.629995
Target:  5'- aGGGCCUCucCCUCgGGGuucuCcUGGACa -3'
miRNA:   3'- cCCUGGAGcuGGAGgCCUu---GcACCUG- -5'
16330 5' -57.6 NC_004084.1 + 40046 0.66 0.629995
Target:  5'- cGGGcugcacguccgaGCCgUCGACC-CCGcGAACGUcgGGAUg -3'
miRNA:   3'- -CCC------------UGG-AGCUGGaGGC-CUUGCA--CCUG- -5'
16330 5' -57.6 NC_004084.1 + 41715 0.66 0.619352
Target:  5'- cGGuCUUCGACCUucagaucgucCCGGAugACGaucgGGACg -3'
miRNA:   3'- cCCuGGAGCUGGA----------GGCCU--UGCa---CCUG- -5'
16330 5' -57.6 NC_004084.1 + 45418 0.66 0.619352
Target:  5'- aGGGCCUCGACUcguUCaCGGGugAUGgGGAUg -3'
miRNA:   3'- cCCUGGAGCUGG---AG-GCCU--UGCaCCUG- -5'
16330 5' -57.6 NC_004084.1 + 22460 0.67 0.606596
Target:  5'- cGGGACUggucacggccgcCGACC-CCGGcGACGccggGGACa -3'
miRNA:   3'- -CCCUGGa-----------GCUGGaGGCC-UUGCa---CCUG- -5'
16330 5' -57.6 NC_004084.1 + 44211 0.67 0.598107
Target:  5'- aGGACCUCGACgagCGGAugGccGACg -3'
miRNA:   3'- cCCUGGAGCUGgagGCCUugCacCUG- -5'
16330 5' -57.6 NC_004084.1 + 52857 0.67 0.581186
Target:  5'- uGGcGACCUCGACaacgucgacuuaucgCuUCCGGAG-GUGGAa -3'
miRNA:   3'- -CC-CUGGAGCUG---------------G-AGGCCUUgCACCUg -5'
16330 5' -57.6 NC_004084.1 + 47147 0.68 0.539391
Target:  5'- aGGGGCaCUCGuACCUCCugcucuacggcgacuGGGAUGcugaccgGGACg -3'
miRNA:   3'- -CCCUG-GAGC-UGGAGG---------------CCUUGCa------CCUG- -5'
16330 5' -57.6 NC_004084.1 + 5774 0.68 0.524994
Target:  5'- cGGGGCCUCuGCUUgaGGAACGUaccGGCg -3'
miRNA:   3'- -CCCUGGAGcUGGAggCCUUGCAc--CUG- -5'
16330 5' -57.6 NC_004084.1 + 18297 0.68 0.523972
Target:  5'- aGGccACCgUCGGCCUCguaGGAcucgaagccgcugGCGUGGGCg -3'
miRNA:   3'- cCC--UGG-AGCUGGAGg--CCU-------------UGCACCUG- -5'
16330 5' -57.6 NC_004084.1 + 9336 0.68 0.50469
Target:  5'- cGGGugCUUGAUCccgCCGGGcuucgcgccgAUGUGGAa -3'
miRNA:   3'- -CCCugGAGCUGGa--GGCCU----------UGCACCUg -5'
16330 5' -57.6 NC_004084.1 + 45513 0.69 0.484731
Target:  5'- cGGGCCggUCGGCCacUCCGaGGACGccgGGAUg -3'
miRNA:   3'- cCCUGG--AGCUGG--AGGC-CUUGCa--CCUG- -5'
16330 5' -57.6 NC_004084.1 + 52741 0.69 0.484731
Target:  5'- cGGACCUCGAcgaCCUCCgcugGGAcuACGaugcGGACu -3'
miRNA:   3'- cCCUGGAGCU---GGAGG----CCU--UGCa---CCUG- -5'
16330 5' -57.6 NC_004084.1 + 8160 0.69 0.474894
Target:  5'- aGGACCUCGccGCCaaCGGcGACGaGGACg -3'
miRNA:   3'- cCCUGGAGC--UGGagGCC-UUGCaCCUG- -5'
16330 5' -57.6 NC_004084.1 + 35240 0.69 0.473915
Target:  5'- -cGACgUCGACCaccUCUGGGACGaccaggaUGGACg -3'
miRNA:   3'- ccCUGgAGCUGG---AGGCCUUGC-------ACCUG- -5'
16330 5' -57.6 NC_004084.1 + 39575 0.69 0.469039
Target:  5'- cGGGACCgucgaCGAaagccgcgccaccguCCUCCuGGACGUGGcCg -3'
miRNA:   3'- -CCCUGGa----GCU---------------GGAGGcCUUGCACCuG- -5'
16330 5' -57.6 NC_004084.1 + 9149 0.69 0.465157
Target:  5'- -cGACUUCG-CCgucgCCGuGACGUGGACg -3'
miRNA:   3'- ccCUGGAGCuGGa---GGCcUUGCACCUG- -5'
16330 5' -57.6 NC_004084.1 + 22742 0.7 0.409062
Target:  5'- gGGGugagaugCUCGACCUUCGcGuuACGUGGACc -3'
miRNA:   3'- -CCCug-----GAGCUGGAGGC-Cu-UGCACCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.