miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16331 3' -55.7 NC_004084.1 + 45518 0.66 0.712348
Target:  5'- cGGUCGgcCACUCcgAGGAcGCCggGAUGGGUu -3'
miRNA:   3'- aCUAGC--GUGAG--UCCU-CGGa-CUGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 29005 0.66 0.690751
Target:  5'- aUGAcCGCGaugCAGGAGCCcaucgagGGC-GGCa -3'
miRNA:   3'- -ACUaGCGUga-GUCCUCGGa------CUGuCCG- -5'
16331 3' -55.7 NC_004084.1 + 26130 0.66 0.690751
Target:  5'- cGAUCGCGuugUCGGuGAGCaCgcccagguugGGCGGGCa -3'
miRNA:   3'- aCUAGCGUg--AGUC-CUCG-Ga---------CUGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 15480 0.66 0.690751
Target:  5'- -uGUCGCACUgCAGGGuGuCCUcGAUAGGa -3'
miRNA:   3'- acUAGCGUGA-GUCCU-C-GGA-CUGUCCg -5'
16331 3' -55.7 NC_004084.1 + 22196 0.66 0.679863
Target:  5'- cGGUUGCcCUCgAGGAGaCCgGAgAGGUu -3'
miRNA:   3'- aCUAGCGuGAG-UCCUC-GGaCUgUCCG- -5'
16331 3' -55.7 NC_004084.1 + 53104 0.66 0.679863
Target:  5'- aGGagGCACUCGacGGAGCCgccGAguGGa -3'
miRNA:   3'- aCUagCGUGAGU--CCUCGGa--CUguCCg -5'
16331 3' -55.7 NC_004084.1 + 45812 0.66 0.677679
Target:  5'- cGAUCGCGCUCuggccgauccacGGuGCCUGGgAGuCg -3'
miRNA:   3'- aCUAGCGUGAGu-----------CCuCGGACUgUCcG- -5'
16331 3' -55.7 NC_004084.1 + 20631 0.67 0.646967
Target:  5'- cGAUCGaaGCcCGGaaAGCCUGGCAGGUu -3'
miRNA:   3'- aCUAGCg-UGaGUCc-UCGGACUGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 42657 0.67 0.646967
Target:  5'- aGAUCGCcgUCGaGAGCCUGAauacucGGCg -3'
miRNA:   3'- aCUAGCGugAGUcCUCGGACUgu----CCG- -5'
16331 3' -55.7 NC_004084.1 + 49115 0.67 0.624952
Target:  5'- cGAgagCGuCACgaucugaAGGAGCCgGAcCAGGCg -3'
miRNA:   3'- aCUa--GC-GUGag-----UCCUCGGaCU-GUCCG- -5'
16331 3' -55.7 NC_004084.1 + 51232 0.67 0.624952
Target:  5'- cGAUCcCACUCucGGuaCUGAUAGGCg -3'
miRNA:   3'- aCUAGcGUGAGucCUcgGACUGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 167 0.67 0.613948
Target:  5'- aGAUCaCgaaUCAGGAGCgUGAuuaCGGGCa -3'
miRNA:   3'- aCUAGcGug-AGUCCUCGgACU---GUCCG- -5'
16331 3' -55.7 NC_004084.1 + 41805 0.68 0.591998
Target:  5'- cGAUCGaC-CUCgAGGAGCCcGcCGGGUc -3'
miRNA:   3'- aCUAGC-GuGAG-UCCUCGGaCuGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 41130 0.68 0.58107
Target:  5'- gUGAUgGCGCU----GGCCUGuCAGGCu -3'
miRNA:   3'- -ACUAgCGUGAguccUCGGACuGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 11304 0.68 0.537859
Target:  5'- -cGUCGCACcggaugCAGGuGCCgaccGGCGGGUu -3'
miRNA:   3'- acUAGCGUGa-----GUCCuCGGa---CUGUCCG- -5'
16331 3' -55.7 NC_004084.1 + 43942 0.7 0.475342
Target:  5'- gGAgcCGaCGCUCAGGAggcgGCCUGGgaGGGCg -3'
miRNA:   3'- aCUa-GC-GUGAGUCCU----CGGACUg-UCCG- -5'
16331 3' -55.7 NC_004084.1 + 55418 0.7 0.475342
Target:  5'- aUGAUCGC-CggGGGGGUCUGGCucaguGGUg -3'
miRNA:   3'- -ACUAGCGuGagUCCUCGGACUGu----CCG- -5'
16331 3' -55.7 NC_004084.1 + 33194 0.7 0.445462
Target:  5'- cUGAagUCGUACU-GGGAGCCgaaGACAgaGGCg -3'
miRNA:   3'- -ACU--AGCGUGAgUCCUCGGa--CUGU--CCG- -5'
16331 3' -55.7 NC_004084.1 + 56575 0.71 0.389027
Target:  5'- -cGUCGCGCUgCAGGAGCCacaccgUGaACGcGGCg -3'
miRNA:   3'- acUAGCGUGA-GUCCUCGG------AC-UGU-CCG- -5'
16331 3' -55.7 NC_004084.1 + 17273 1.11 0.000661
Target:  5'- gUGAUCGCACUCAGGAGCCUGACAGGCc -3'
miRNA:   3'- -ACUAGCGUGAGUCCUCGGACUGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.