miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 3' -56.1 NC_004084.1 + 50928 0.66 0.755689
Target:  5'- ---gUCGGCCgacuugcucgucucgCCUUCGCCGUCG--CCg -3'
miRNA:   3'- ccuaGGCCGG---------------GGAAGUGGCAGCaaGG- -5'
16332 3' -56.1 NC_004084.1 + 47684 0.66 0.751672
Target:  5'- gGGAUaCCaGCCUCUggagCGCCGaacUCGUggugcUCCg -3'
miRNA:   3'- -CCUA-GGcCGGGGAa---GUGGC---AGCA-----AGG- -5'
16332 3' -56.1 NC_004084.1 + 33207 0.66 0.748647
Target:  5'- cGGGUuagaCCGGCCCUUcguauucccaguugUgACCGcCGUUaCCg -3'
miRNA:   3'- -CCUA----GGCCGGGGA--------------AgUGGCaGCAA-GG- -5'
16332 3' -56.1 NC_004084.1 + 53610 0.66 0.747637
Target:  5'- cGAUCCGGCCCgcCUUCucuGCCGcuacagauucgaGUUCUg -3'
miRNA:   3'- cCUAGGCCGGG--GAAG---UGGCag----------CAAGG- -5'
16332 3' -56.1 NC_004084.1 + 10749 0.66 0.735427
Target:  5'- gGGAUCCGGCUCgccagugggggcgUCGCCGaccUCGacgCCg -3'
miRNA:   3'- -CCUAGGCCGGGga-----------AGUGGC---AGCaa-GG- -5'
16332 3' -56.1 NC_004084.1 + 6800 0.66 0.710603
Target:  5'- gGGAUCa-GCUCCcgCGCCGUCGacgUCa -3'
miRNA:   3'- -CCUAGgcCGGGGaaGUGGCAGCa--AGg -5'
16332 3' -56.1 NC_004084.1 + 26434 0.67 0.700127
Target:  5'- cGGAUCCaGGUCga-UCACgaggaCGUCGUUCCc -3'
miRNA:   3'- -CCUAGG-CCGGggaAGUG-----GCAGCAAGG- -5'
16332 3' -56.1 NC_004084.1 + 39730 0.67 0.689589
Target:  5'- --uUCUGGCCCCagUCcUCGUCGggUCUg -3'
miRNA:   3'- ccuAGGCCGGGGa-AGuGGCAGCa-AGG- -5'
16332 3' -56.1 NC_004084.1 + 5150 0.68 0.614912
Target:  5'- aGGAcgucgcCCGGCCCgaucucgUCGCCGUCGacgaCCg -3'
miRNA:   3'- -CCUa-----GGCCGGGga-----AGUGGCAGCaa--GG- -5'
16332 3' -56.1 NC_004084.1 + 35336 0.68 0.604228
Target:  5'- cGA-CCGGCCCgaugUACCGuUCGUUUCg -3'
miRNA:   3'- cCUaGGCCGGGgaa-GUGGC-AGCAAGG- -5'
16332 3' -56.1 NC_004084.1 + 54350 0.68 0.582936
Target:  5'- aGGuUCCGcaucuccucgcGCCCCUUCuCCGUCaacUCCg -3'
miRNA:   3'- -CCuAGGC-----------CGGGGAAGuGGCAGca-AGG- -5'
16332 3' -56.1 NC_004084.1 + 50797 0.69 0.551307
Target:  5'- --cUCgGuGCCagCUUCGCCGUCGUagUCCa -3'
miRNA:   3'- ccuAGgC-CGGg-GAAGUGGCAGCA--AGG- -5'
16332 3' -56.1 NC_004084.1 + 9295 0.7 0.520219
Target:  5'- uGGUCCGGCUCCUUCAgaUCGUgaCGcUCUc -3'
miRNA:   3'- cCUAGGCCGGGGAAGU--GGCA--GCaAGG- -5'
16332 3' -56.1 NC_004084.1 + 2447 0.74 0.284505
Target:  5'- cGAUCa-GCCCCUccgcgUCGCCGUCGUaCCc -3'
miRNA:   3'- cCUAGgcCGGGGA-----AGUGGCAGCAaGG- -5'
16332 3' -56.1 NC_004084.1 + 16446 1.15 0.000453
Target:  5'- cGGAUCCGGCCCCUUCACCGUCGUUCCg -3'
miRNA:   3'- -CCUAGGCCGGGGAAGUGGCAGCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.