Results 41 - 50 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 8729 | 0.68 | 0.784795 |
Target: 5'- ----cGGCGucACCcUCGuGGAUGUCGCCg -3' miRNA: 3'- gcucuCUGC--UGGuAGC-CCUAUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 8377 | 0.7 | 0.654091 |
Target: 5'- uGAGGGACGAgCAUCuucgacuuucgucGGAUGUUGCUc -3' miRNA: 3'- gCUCUCUGCUgGUAGc------------CCUAUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 5882 | 0.66 | 0.857689 |
Target: 5'- gGAGcAGACcGCCA-CGGGG-AUCGUCc -3' miRNA: 3'- gCUC-UCUGcUGGUaGCCCUaUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 5713 | 0.7 | 0.669387 |
Target: 5'- uCGAG-GACGucgcucggGCCGagguccucgaUCGGGAUgAUCGCCu -3' miRNA: 3'- -GCUCuCUGC--------UGGU----------AGCCCUA-UAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 5015 | 0.66 | 0.888817 |
Target: 5'- cCGAGAGGgGAUCAaCGGGcugAUCGa- -3' miRNA: 3'- -GCUCUCUgCUGGUaGCCCua-UAGCgg -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 4960 | 0.67 | 0.840694 |
Target: 5'- cCGGGAGACGAcgacCCA-CGaGGAgAUCGgCg -3' miRNA: 3'- -GCUCUCUGCU----GGUaGC-CCUaUAGCgG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 1548 | 0.69 | 0.712614 |
Target: 5'- cCGAGGcGACGGCCGUCGagccGGAgccCGCg -3' miRNA: 3'- -GCUCU-CUGCUGGUAGC----CCUauaGCGg -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 867 | 0.67 | 0.82283 |
Target: 5'- aGAGucagucgucGACGucGCCGUCGGaaucGGUAUCGCUg -3' miRNA: 3'- gCUCu--------CUGC--UGGUAGCC----CUAUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 635 | 0.7 | 0.669387 |
Target: 5'- uGGGGGACGACgAgaaGGAcAUCGCCc -3' miRNA: 3'- gCUCUCUGCUGgUagcCCUaUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 205 | 0.75 | 0.399504 |
Target: 5'- cCGGGAGcccgcACGGCCAUCGGcGGgggaGUCGUCg -3' miRNA: 3'- -GCUCUC-----UGCUGGUAGCC-CUa---UAGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home