miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 40168 0.68 0.80417
Target:  5'- uCGA-AGACG-UCAUCGGGAUG--GCCa -3'
miRNA:   3'- -GCUcUCUGCuGGUAGCCCUAUagCGG- -5'
16332 5' -52.9 NC_004084.1 + 11054 0.68 0.80417
Target:  5'- uGGGAGACGcagaACCAgccGGAacuggGUCGCCa -3'
miRNA:   3'- gCUCUCUGC----UGGUagcCCUa----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 9937 0.68 0.802263
Target:  5'- aGuGAGACGugCGUCGGcGGgucggaguaGCCa -3'
miRNA:   3'- gCuCUCUGCugGUAGCC-CUauag-----CGG- -5'
16332 5' -52.9 NC_004084.1 + 29587 0.68 0.784795
Target:  5'- cCGAGAcGGCGaACCgGUCGcGAUGcUCGCCc -3'
miRNA:   3'- -GCUCU-CUGC-UGG-UAGCcCUAU-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 8729 0.68 0.784795
Target:  5'- ----cGGCGucACCcUCGuGGAUGUCGCCg -3'
miRNA:   3'- gcucuCUGC--UGGuAGC-CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 57122 0.68 0.774866
Target:  5'- uCGAG-GACGuCC-UCGG--UGUCGCCg -3'
miRNA:   3'- -GCUCuCUGCuGGuAGCCcuAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 53125 0.68 0.774866
Target:  5'- cCGAGuggauGGCgGACCAUccgcugCGGGAcGUCGUCg -3'
miRNA:   3'- -GCUCu----CUG-CUGGUA------GCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 41739 0.68 0.774866
Target:  5'- ---cGGAUGACgAUCGGGAcgaCGCCg -3'
miRNA:   3'- gcucUCUGCUGgUAGCCCUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 48895 0.68 0.764791
Target:  5'- -cAGuGAUGACCGUCGGucgGUCgGCCa -3'
miRNA:   3'- gcUCuCUGCUGGUAGCCcuaUAG-CGG- -5'
16332 5' -52.9 NC_004084.1 + 41623 0.68 0.764791
Target:  5'- aCGcGAGGCGACgGUCcGGGAcAUCGaCg -3'
miRNA:   3'- -GCuCUCUGCUGgUAG-CCCUaUAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 17049 0.68 0.763776
Target:  5'- uCGAGAguucguaaucgucGACGACgAUUucGGAUAUCGCUg -3'
miRNA:   3'- -GCUCU-------------CUGCUGgUAGc-CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 18557 0.69 0.744247
Target:  5'- --cGGGugGGCCGaCGGGGagAUCGCg -3'
miRNA:   3'- gcuCUCugCUGGUaGCCCUa-UAGCGg -5'
16332 5' -52.9 NC_004084.1 + 35901 0.69 0.712614
Target:  5'- -cGGAGGCGAUCGUCGucgaGGAUGaCGCg -3'
miRNA:   3'- gcUCUCUGCUGGUAGC----CCUAUaGCGg -5'
16332 5' -52.9 NC_004084.1 + 1548 0.69 0.712614
Target:  5'- cCGAGGcGACGGCCGUCGagccGGAgccCGCg -3'
miRNA:   3'- -GCUCU-CUGCUGGUAGC----CCUauaGCGg -5'
16332 5' -52.9 NC_004084.1 + 46998 0.7 0.680273
Target:  5'- --cGAGACGACCGcgaguuccUCGaGGAcGUCGCg -3'
miRNA:   3'- gcuCUCUGCUGGU--------AGC-CCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 5713 0.7 0.669387
Target:  5'- uCGAG-GACGucgcucggGCCGagguccucgaUCGGGAUgAUCGCCu -3'
miRNA:   3'- -GCUCuCUGC--------UGGU----------AGCCCUA-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 635 0.7 0.669387
Target:  5'- uGGGGGACGACgAgaaGGAcAUCGCCc -3'
miRNA:   3'- gCUCUCUGCUGgUagcCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 8377 0.7 0.654091
Target:  5'- uGAGGGACGAgCAUCuucgacuuucgucGGAUGUUGCUc -3'
miRNA:   3'- gCUCUCUGCUgGUAGc------------CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 55376 0.71 0.636563
Target:  5'- uCGAGGGugGCGAUCAUCGccGUAUuCGCCa -3'
miRNA:   3'- -GCUCUC--UGCUGGUAGCccUAUA-GCGG- -5'
16332 5' -52.9 NC_004084.1 + 44671 0.71 0.592784
Target:  5'- ---cGGACGAUacuuguUCGGGAUAUCGUCg -3'
miRNA:   3'- gcucUCUGCUGgu----AGCCCUAUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.