miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16333 3' -58.8 NC_004084.1 + 34045 0.66 0.578624
Target:  5'- gGGACGGaGUcGGCuCGCaucucgaacucgaGcGUGGUCGCGUu -3'
miRNA:   3'- aCUUGCC-CA-CUG-GCG-------------C-CACCAGCGCG- -5'
16333 3' -58.8 NC_004084.1 + 1768 0.66 0.558781
Target:  5'- cGAGCGGGgccUGGCga-GGUGGUCGUu- -3'
miRNA:   3'- aCUUGCCC---ACUGgcgCCACCAGCGcg -5'
16333 3' -58.8 NC_004084.1 + 54722 0.66 0.552554
Target:  5'- cGGAUGGuGUGACCgGgaacguacgccagccCGGUGGgCGUGCc -3'
miRNA:   3'- aCUUGCC-CACUGG-C---------------GCCACCaGCGCG- -5'
16333 3' -58.8 NC_004084.1 + 37863 0.68 0.477879
Target:  5'- cGAACGGGaUGGCCggGCGG-GuGUCGgauCGCc -3'
miRNA:   3'- aCUUGCCC-ACUGG--CGCCaC-CAGC---GCG- -5'
16333 3' -58.8 NC_004084.1 + 29139 0.68 0.45854
Target:  5'- -cGGCGGuGUcGGCgGUGcugguGUGGUCGCGCg -3'
miRNA:   3'- acUUGCC-CA-CUGgCGC-----CACCAGCGCG- -5'
16333 3' -58.8 NC_004084.1 + 11215 0.68 0.449028
Target:  5'- cGGACGGGUGAU--CGGUGGccUCGagaaGCc -3'
miRNA:   3'- aCUUGCCCACUGgcGCCACC--AGCg---CG- -5'
16333 3' -58.8 NC_004084.1 + 11589 0.68 0.438693
Target:  5'- cUGAACGGuGUcGCCGCaGUugucgcaGGUCGCGa -3'
miRNA:   3'- -ACUUGCC-CAcUGGCGcCA-------CCAGCGCg -5'
16333 3' -58.8 NC_004084.1 + 13775 0.69 0.412112
Target:  5'- cUGGGCGGGcucggaGAUCGCguccGGuUGGUCGCGa -3'
miRNA:   3'- -ACUUGCCCa-----CUGGCG----CC-ACCAGCGCg -5'
16333 3' -58.8 NC_004084.1 + 57606 0.69 0.394372
Target:  5'- cGAACGGGuUGAggaguUCGCGcuucGUcucgaGGUCGCGCg -3'
miRNA:   3'- aCUUGCCC-ACU-----GGCGC----CA-----CCAGCGCG- -5'
16333 3' -58.8 NC_004084.1 + 29412 0.69 0.389147
Target:  5'- cGAugGGcuccUGcAUCGCGGUcaucaggccgacgucGGUCGCGCg -3'
miRNA:   3'- aCUugCCc---AC-UGGCGCCA---------------CCAGCGCG- -5'
16333 3' -58.8 NC_004084.1 + 50027 0.71 0.320906
Target:  5'- cGAGCGGGgUGuCC-CGGUcGGUCaGCGUg -3'
miRNA:   3'- aCUUGCCC-ACuGGcGCCA-CCAG-CGCG- -5'
16333 3' -58.8 NC_004084.1 + 17285 0.71 0.291702
Target:  5'- gUGGAgGcGGUGGCgGCGGUGG-CG-GCg -3'
miRNA:   3'- -ACUUgC-CCACUGgCGCCACCaGCgCG- -5'
16333 3' -58.8 NC_004084.1 + 35089 0.8 0.080675
Target:  5'- cUGAuACGGGUGACCGCuucUGGUaCGCGCu -3'
miRNA:   3'- -ACU-UGCCCACUGGCGcc-ACCA-GCGCG- -5'
16333 3' -58.8 NC_004084.1 + 16135 1.11 0.00042
Target:  5'- gUGAACGGGUGACCGCGGUGGUCGCGCu -3'
miRNA:   3'- -ACUUGCCCACUGGCGCCACCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.