miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16333 5' -56.2 NC_004084.1 + 5405 0.68 0.607316
Target:  5'- cCGCUCGAuCCAgUAggucUCGUggCCGUCCGg -3'
miRNA:   3'- aGUGAGCU-GGUgGU----GGCAa-GGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 6053 0.66 0.744857
Target:  5'- -gAUUCGA-UACCAgguCgGUUCCGUCCGu -3'
miRNA:   3'- agUGAGCUgGUGGU---GgCAAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 6699 0.67 0.650226
Target:  5'- cCAuCUCGAggUCAaCGCCGgcgaugUCCGUCCGg -3'
miRNA:   3'- aGU-GAGCU--GGUgGUGGCa-----AGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 7103 0.7 0.453061
Target:  5'- gCACUCGAUCGCCuCgGUcgCCGUCUu -3'
miRNA:   3'- aGUGAGCUGGUGGuGgCAa-GGCAGGc -5'
16333 5' -56.2 NC_004084.1 + 8487 0.67 0.671623
Target:  5'- cCACU-GACCACCugCGccgCCGgaUCCa -3'
miRNA:   3'- aGUGAgCUGGUGGugGCaa-GGC--AGGc -5'
16333 5' -56.2 NC_004084.1 + 11295 0.66 0.724317
Target:  5'- cUCGCUCGGCguCgCACCGgaugcaggugCCGaCCGg -3'
miRNA:   3'- -AGUGAGCUGguG-GUGGCaa--------GGCaGGC- -5'
16333 5' -56.2 NC_004084.1 + 16074 0.68 0.596618
Target:  5'- gCGCUCGAguuCCGCCGCCucGUcgaUCuCGUCCc -3'
miRNA:   3'- aGUGAGCU---GGUGGUGG--CA---AG-GCAGGc -5'
16333 5' -56.2 NC_004084.1 + 16171 1.09 0.001171
Target:  5'- aUCACUCGACCACCACCGUUCCGUCCGc -3'
miRNA:   3'- -AGUGAGCUGGUGGUGGCAAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 16388 0.68 0.618035
Target:  5'- cUCACUCGACaucggccuCACCuCCGggaugagagUCCGUCgCGu -3'
miRNA:   3'- -AGUGAGCUG--------GUGGuGGCa--------AGGCAG-GC- -5'
16333 5' -56.2 NC_004084.1 + 21797 0.7 0.492429
Target:  5'- gUCAC-CGAUCACCuggcGCUucUCCGUCCGc -3'
miRNA:   3'- -AGUGaGCUGGUGG----UGGcaAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 25206 0.68 0.596618
Target:  5'- cCGCUCGGCCGCCuCUGUcuUCgGcUCCc -3'
miRNA:   3'- aGUGAGCUGGUGGuGGCA--AGgC-AGGc -5'
16333 5' -56.2 NC_004084.1 + 25838 0.67 0.650226
Target:  5'- cCACUCGcCCGCUucguGCCGgaaUCC-UCCGg -3'
miRNA:   3'- aGUGAGCuGGUGG----UGGCa--AGGcAGGC- -5'
16333 5' -56.2 NC_004084.1 + 27305 0.66 0.734636
Target:  5'- -gGCUCGACgaGCUgauauucgACCGUUCaCGUUCGa -3'
miRNA:   3'- agUGAGCUGg-UGG--------UGGCAAG-GCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 27665 0.68 0.618035
Target:  5'- gUCGCUCGACU-CCGguCCGUaCaCGUCCa -3'
miRNA:   3'- -AGUGAGCUGGuGGU--GGCAaG-GCAGGc -5'
16333 5' -56.2 NC_004084.1 + 28133 0.69 0.543712
Target:  5'- uUCGCggccuuccCGACCA-CGCCGaUUCGUCCGa -3'
miRNA:   3'- -AGUGa-------GCUGGUgGUGGCaAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 32391 0.67 0.682273
Target:  5'- cCGCUCGAUCGaguCCG-CGUUCgGUCCc -3'
miRNA:   3'- aGUGAGCUGGU---GGUgGCAAGgCAGGc -5'
16333 5' -56.2 NC_004084.1 + 33232 0.66 0.734636
Target:  5'- cCAgUUG-UgACCGCCGUUaCCGUCCc -3'
miRNA:   3'- aGUgAGCuGgUGGUGGCAA-GGCAGGc -5'
16333 5' -56.2 NC_004084.1 + 35808 0.69 0.533299
Target:  5'- gCGCUCGGucaugagcUCACCACCGUcUCGUCgGc -3'
miRNA:   3'- aGUGAGCU--------GGUGGUGGCAaGGCAGgC- -5'
16333 5' -56.2 NC_004084.1 + 36040 0.66 0.734636
Target:  5'- gCGUUCGACCuCCuggaugaugucGCUgaGUUCCGUCCGg -3'
miRNA:   3'- aGUGAGCUGGuGG-----------UGG--CAAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 37547 0.67 0.650226
Target:  5'- aCGCUCGAuuCCAUCGCCGgcgCgGUCg- -3'
miRNA:   3'- aGUGAGCU--GGUGGUGGCaa-GgCAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.