miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16333 5' -56.2 NC_004084.1 + 25206 0.68 0.596618
Target:  5'- cCGCUCGGCCGCCuCUGUcuUCgGcUCCc -3'
miRNA:   3'- aGUGAGCUGGUGGuGGCA--AGgC-AGGc -5'
16333 5' -56.2 NC_004084.1 + 42279 0.68 0.596618
Target:  5'- -aGCgCGACCACCGCgGUcacCCGUUCa -3'
miRNA:   3'- agUGaGCUGGUGGUGgCAa--GGCAGGc -5'
16333 5' -56.2 NC_004084.1 + 54383 0.68 0.575315
Target:  5'- aUCACUCuGACgCgAUCGCCGUUCCaGUCg- -3'
miRNA:   3'- -AGUGAG-CUG-G-UGGUGGCAAGG-CAGgc -5'
16333 5' -56.2 NC_004084.1 + 40438 0.69 0.564726
Target:  5'- aCGCUCGACaGCgCGCCGacgaUUCCG-CCGu -3'
miRNA:   3'- aGUGAGCUGgUG-GUGGC----AAGGCaGGC- -5'
16333 5' -56.2 NC_004084.1 + 28133 0.69 0.543712
Target:  5'- uUCGCggccuuccCGACCA-CGCCGaUUCGUCCGa -3'
miRNA:   3'- -AGUGa-------GCUGGUgGUGGCaAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 41126 0.69 0.543712
Target:  5'- -uGCUCGccGCCACCGCCGccaCCGccUCCa -3'
miRNA:   3'- agUGAGC--UGGUGGUGGCaa-GGC--AGGc -5'
16333 5' -56.2 NC_004084.1 + 35808 0.69 0.533299
Target:  5'- gCGCUCGGucaugagcUCACCACCGUcUCGUCgGc -3'
miRNA:   3'- aGUGAGCU--------GGUGGUGGCAaGGCAGgC- -5'
16333 5' -56.2 NC_004084.1 + 21797 0.7 0.492429
Target:  5'- gUCAC-CGAUCACCuggcGCUucUCCGUCCGc -3'
miRNA:   3'- -AGUGaGCUGGUGG----UGGcaAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 55223 0.7 0.462746
Target:  5'- -aGCUUcGCCACCGCCucGUUCaCGUCCu -3'
miRNA:   3'- agUGAGcUGGUGGUGG--CAAG-GCAGGc -5'
16333 5' -56.2 NC_004084.1 + 7103 0.7 0.453061
Target:  5'- gCACUCGAUCGCCuCgGUcgCCGUCUu -3'
miRNA:   3'- aGUGAGCUGGUGGuGgCAa-GGCAGGc -5'
16333 5' -56.2 NC_004084.1 + 50314 0.74 0.285844
Target:  5'- cUCGCUCGAgCCAUCGCgGUUCUG-CCa -3'
miRNA:   3'- -AGUGAGCU-GGUGGUGgCAAGGCaGGc -5'
16333 5' -56.2 NC_004084.1 + 16171 1.09 0.001171
Target:  5'- aUCACUCGACCACCACCGUUCCGUCCGc -3'
miRNA:   3'- -AGUGAGCUGGUGGUGGCAAGGCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.