miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16334 3' -56.3 NC_004084.1 + 35285 0.66 0.693324
Target:  5'- ----cGGCGCUgGGGAGGuccuCGaUCGUUu -3'
miRNA:   3'- uacuaCUGCGAgCCCUCCu---GC-AGCAG- -5'
16334 3' -56.3 NC_004084.1 + 39832 0.66 0.682548
Target:  5'- cAUGAUGGCGCUCGaguccaucGGcGGccgcgGCGcCGUCg -3'
miRNA:   3'- -UACUACUGCGAGC--------CCuCC-----UGCaGCAG- -5'
16334 3' -56.3 NC_004084.1 + 41740 0.66 0.660865
Target:  5'- -gGAUGACGaUCGGGAcGACGcCGg- -3'
miRNA:   3'- uaCUACUGCgAGCCCUcCUGCaGCag -5'
16334 3' -56.3 NC_004084.1 + 565 0.66 0.649979
Target:  5'- -aGGUGACGUUCGc---GAUGUCGUCg -3'
miRNA:   3'- uaCUACUGCGAGCccucCUGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 29322 0.66 0.639077
Target:  5'- -gGAUGGCGC---GGAGGACGUCc-- -3'
miRNA:   3'- uaCUACUGCGagcCCUCCUGCAGcag -5'
16334 3' -56.3 NC_004084.1 + 51727 0.67 0.617264
Target:  5'- -cGuUGAC-CUCGaGAuGGACGUCGUCg -3'
miRNA:   3'- uaCuACUGcGAGCcCU-CCUGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 29570 0.67 0.606372
Target:  5'- uUGAgggccauCGC-CGGGuGGGCGUCGUUc -3'
miRNA:   3'- uACUacu----GCGaGCCCuCCUGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 20021 0.67 0.584662
Target:  5'- -cGAUcGGCGCUCGaGGAcGACGaucgCGUCu -3'
miRNA:   3'- uaCUA-CUGCGAGC-CCUcCUGCa---GCAG- -5'
16334 3' -56.3 NC_004084.1 + 29076 0.68 0.573861
Target:  5'- ------cCGCUCGGG-GG-CGUCGUCg -3'
miRNA:   3'- uacuacuGCGAGCCCuCCuGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 56288 0.68 0.552408
Target:  5'- cUGGUGAC-CUCGGuggaaGAGGAUG-CGUCc -3'
miRNA:   3'- uACUACUGcGAGCC-----CUCCUGCaGCAG- -5'
16334 3' -56.3 NC_004084.1 + 39205 0.68 0.52071
Target:  5'- -cGAUGACGCaCGGcGAcaucucugucgGaGACGUCGUCu -3'
miRNA:   3'- uaCUACUGCGaGCC-CU-----------C-CUGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 33254 0.69 0.489748
Target:  5'- gAUGAgGACGUc---GAGGACGUCGUCa -3'
miRNA:   3'- -UACUaCUGCGagccCUCCUGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 10889 0.69 0.459672
Target:  5'- gAUGAUGGCGaucgUCGGGuacucccgaucgGGGAguuCGUCGUCu -3'
miRNA:   3'- -UACUACUGCg---AGCCC------------UCCU---GCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 50144 0.71 0.375865
Target:  5'- -gGAUGACGaggUCGuugucGAGGAUGUCGUCa -3'
miRNA:   3'- uaCUACUGCg--AGCc----CUCCUGCAGCAG- -5'
16334 3' -56.3 NC_004084.1 + 937 0.76 0.190772
Target:  5'- cUGGUGACGCUCccGGAGGAgGUCG-Cg -3'
miRNA:   3'- uACUACUGCGAGc-CCUCCUgCAGCaG- -5'
16334 3' -56.3 NC_004084.1 + 15749 1.08 0.000959
Target:  5'- gAUGAUGACGCUCGGGAGGACGUCGUCg -3'
miRNA:   3'- -UACUACUGCGAGCCCUCCUGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.