miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16334 5' -55.1 NC_004084.1 + 9361 0.66 0.778142
Target:  5'- gCGCCGAUgUGGAACUgCgGGUUGc-- -3'
miRNA:   3'- gGCGGCUG-ACCUUGAgGgUCAGCaac -5'
16334 5' -55.1 NC_004084.1 + 9729 0.66 0.778142
Target:  5'- gCCGgCGGCUucgaGGAuCUCCCAcGUCGc-- -3'
miRNA:   3'- -GGCgGCUGA----CCUuGAGGGU-CAGCaac -5'
16334 5' -55.1 NC_004084.1 + 55824 0.66 0.778142
Target:  5'- uCgGUCGACccggaGGAACUCCaGGUCGaUGg -3'
miRNA:   3'- -GgCGGCUGa----CCUUGAGGgUCAGCaAC- -5'
16334 5' -55.1 NC_004084.1 + 14181 0.66 0.768213
Target:  5'- cCCGUCGuagacGAGCUCCCAGcCGUc- -3'
miRNA:   3'- -GGCGGCugac-CUUGAGGGUCaGCAac -5'
16334 5' -55.1 NC_004084.1 + 19004 0.66 0.747958
Target:  5'- cCCGCUGGCgGGGugggaUCCCGG-CGUg- -3'
miRNA:   3'- -GGCGGCUGaCCUug---AGGGUCaGCAac -5'
16334 5' -55.1 NC_004084.1 + 49383 0.67 0.716745
Target:  5'- cCCGCuCGAUgcGGGAUUCgUAGUCGUcgUGg -3'
miRNA:   3'- -GGCG-GCUGa-CCUUGAGgGUCAGCA--AC- -5'
16334 5' -55.1 NC_004084.1 + 38924 0.68 0.652412
Target:  5'- aCGaCCGACUGGAGaauuuaaUUCCAGUCu--- -3'
miRNA:   3'- gGC-GGCUGACCUUg------AGGGUCAGcaac -5'
16334 5' -55.1 NC_004084.1 + 26093 0.68 0.652412
Target:  5'- uUCGCCugcGCUGGGAUcaggacguUCCCGGUCGc-- -3'
miRNA:   3'- -GGCGGc--UGACCUUG--------AGGGUCAGCaac -5'
16334 5' -55.1 NC_004084.1 + 414 0.68 0.641567
Target:  5'- gUCGUCGAuCUGGAcgucgcACUCgUAGUCGUa- -3'
miRNA:   3'- -GGCGGCU-GACCU------UGAGgGUCAGCAac -5'
16334 5' -55.1 NC_004084.1 + 41757 0.68 0.61986
Target:  5'- aCGCCGGCgacgaGGAcCUCCCGGaCGa-- -3'
miRNA:   3'- gGCGGCUGa----CCUuGAGGGUCaGCaac -5'
16334 5' -55.1 NC_004084.1 + 58210 0.69 0.609018
Target:  5'- cCCGCCGAUggccgUGcGGGCUCCCGGaaCGUc- -3'
miRNA:   3'- -GGCGGCUG-----AC-CUUGAGGGUCa-GCAac -5'
16334 5' -55.1 NC_004084.1 + 36661 0.69 0.609018
Target:  5'- gCCGCCGAUccccgUGGAACcgUCCAGgguUCGUg- -3'
miRNA:   3'- -GGCGGCUG-----ACCUUGa-GGGUC---AGCAac -5'
16334 5' -55.1 NC_004084.1 + 55925 0.7 0.555266
Target:  5'- -gGCCGACUGGA-CU-UCAGUCGUc- -3'
miRNA:   3'- ggCGGCUGACCUuGAgGGUCAGCAac -5'
16334 5' -55.1 NC_004084.1 + 58181 0.7 0.502986
Target:  5'- uUCGCCGGCUGcGugcaucGCUCgCCGGUCGa-- -3'
miRNA:   3'- -GGCGGCUGAC-Cu-----UGAG-GGUCAGCaac -5'
16334 5' -55.1 NC_004084.1 + 47359 0.7 0.502986
Target:  5'- cCCaguuCCGGCUGGuucugcguCUCCCAGUCGa-- -3'
miRNA:   3'- -GGc---GGCUGACCuu------GAGGGUCAGCaac -5'
16334 5' -55.1 NC_004084.1 + 42626 0.7 0.502986
Target:  5'- gCGUugucaaCGACUGGGAgUUCCAGUCGgcGg -3'
miRNA:   3'- gGCG------GCUGACCUUgAGGGUCAGCaaC- -5'
16334 5' -55.1 NC_004084.1 + 14644 0.73 0.361797
Target:  5'- uCCGCCGGC--GAGCgCCCAGUCGa-- -3'
miRNA:   3'- -GGCGGCUGacCUUGaGGGUCAGCaac -5'
16334 5' -55.1 NC_004084.1 + 15813 0.74 0.313555
Target:  5'- aCGCCGA--GGAacgucgGCUCCUGGUCGUUGu -3'
miRNA:   3'- gGCGGCUgaCCU------UGAGGGUCAGCAAC- -5'
16334 5' -55.1 NC_004084.1 + 50022 0.77 0.214689
Target:  5'- gUCGCCGAgCgGGGugUCCCGGUCGg-- -3'
miRNA:   3'- -GGCGGCU-GaCCUugAGGGUCAGCaac -5'
16334 5' -55.1 NC_004084.1 + 15783 1.11 0.001029
Target:  5'- gCCGCCGACUGGAACUCCCAGUCGUUGa -3'
miRNA:   3'- -GGCGGCUGACCUUGAGGGUCAGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.