Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16335 | 3' | -61.1 | NC_004084.1 | + | 14194 | 1.09 | 0.000299 |
Target: 5'- aGCUCCCAGCCGUCGGCCAUCCGCUCGu -3' miRNA: 3'- -CGAGGGUCGGCAGCCGGUAGGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 16057 | 0.67 | 0.409238 |
Target: 5'- uGCUCCC-GC--UCGGCCuggCGCUCGa -3' miRNA: 3'- -CGAGGGuCGgcAGCCGGuagGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 57807 | 0.67 | 0.408351 |
Target: 5'- aGCUCCaucuGCguggucugguugaCGUCGGCCGUCauCUCGa -3' miRNA: 3'- -CGAGGgu--CG-------------GCAGCCGGUAGgcGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 45686 | 0.67 | 0.366431 |
Target: 5'- cGCUCUCugGGCCaGUCGGgCAUCCagaUCGa -3' miRNA: 3'- -CGAGGG--UCGG-CAGCCgGUAGGcg-AGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 944 | 0.68 | 0.334475 |
Target: 5'- cGCUCCCGGaggagGUCgcgGGCCAUCuCGCggUCGg -3' miRNA: 3'- -CGAGGGUCgg---CAG---CCGGUAG-GCG--AGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 35163 | 0.69 | 0.304606 |
Target: 5'- -aUCCCAaagaggaccuuGUCGUCGacGCCA-CCGCUCGg -3' miRNA: 3'- cgAGGGU-----------CGGCAGC--CGGUaGGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 53070 | 0.69 | 0.297466 |
Target: 5'- -gUCCCAGUCcUC-GCCGcCCGCUCGg -3' miRNA: 3'- cgAGGGUCGGcAGcCGGUaGGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 14624 | 0.69 | 0.297466 |
Target: 5'- cGCUCCUcGCCGcCGGaCUcUCCGC-CGg -3' miRNA: 3'- -CGAGGGuCGGCaGCC-GGuAGGCGaGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 5475 | 0.84 | 0.025276 |
Target: 5'- aGCUCCCAGCCGcCGGUCGUgaCgCGCUCGg -3' miRNA: 3'- -CGAGGGUCGGCaGCCGGUA--G-GCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 47941 | 0.67 | 0.409238 |
Target: 5'- cGCUCgaGGCCGUCcgucaGGCCGUCCuggaUCGc -3' miRNA: 3'- -CGAGggUCGGCAG-----CCGGUAGGcg--AGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 16908 | 0.66 | 0.418166 |
Target: 5'- cGUUCCCAGgCGaucgUGGCCGggugCgGUUCGg -3' miRNA: 3'- -CGAGGGUCgGCa---GCCGGUa---GgCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 31005 | 0.66 | 0.436372 |
Target: 5'- cGCU-CCAGCCGacUCGGCCA---GCUUGu -3' miRNA: 3'- -CGAgGGUCGGC--AGCCGGUaggCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 6806 | 0.66 | 0.445645 |
Target: 5'- aGCUCCCGcGCCGUCGacGUCAUaucguugaGUUCGu -3' miRNA: 3'- -CGAGGGU-CGGCAGC--CGGUAgg------CGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 50289 | 0.66 | 0.445645 |
Target: 5'- uGCcgaCCAGgCGUCGGUCAUCagGUUCa -3' miRNA: 3'- -CGag-GGUCgGCAGCCGGUAGg-CGAGc -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 4488 | 0.66 | 0.455027 |
Target: 5'- aGCUCCUuccGGCCcUCGuGCCGgacguuacaUCUGUUCGa -3' miRNA: 3'- -CGAGGG---UCGGcAGC-CGGU---------AGGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 28068 | 0.69 | 0.304606 |
Target: 5'- aGCaUCCgAcGCCGUCGGCCAcCuCGC-CGa -3' miRNA: 3'- -CG-AGGgU-CGGCAGCCGGUaG-GCGaGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 16466 | 0.66 | 0.418166 |
Target: 5'- cGCgagCgCAGUCG-CGGCCcuGUCCGCUg- -3' miRNA: 3'- -CGa--GgGUCGGCaGCCGG--UAGGCGAgc -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 5765 | 0.66 | 0.427212 |
Target: 5'- uGC-CCCcGCCGg-GGCC-UCUGCUUGa -3' miRNA: 3'- -CGaGGGuCGGCagCCGGuAGGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 54117 | 0.66 | 0.437295 |
Target: 5'- aCUCgCCAggucGCCGUCGGCUuccagcaccugacgCCGUUCGc -3' miRNA: 3'- cGAG-GGU----CGGCAGCCGGua------------GGCGAGC- -5' |
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16335 | 3' | -61.1 | NC_004084.1 | + | 29710 | 0.66 | 0.445645 |
Target: 5'- -gUCCUGGCugagucgcguCGUCuGGCCGUCCGCcCa -3' miRNA: 3'- cgAGGGUCG----------GCAG-CCGGUAGGCGaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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