miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16336 5' -53.6 NC_004084.1 + 1726 0.66 0.865492
Target:  5'- gGCGgcugcUCGaUCGgugACCGAgACC-CGCCGc -3'
miRNA:   3'- -CGC-----AGCaAGUa--UGGCUgUGGaGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 56637 0.66 0.865492
Target:  5'- uCGUgGcUCAgaaCGAcCACCUCGCCa -3'
miRNA:   3'- cGCAgCaAGUaugGCU-GUGGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 36101 0.66 0.865492
Target:  5'- uCGUCGUcuUCGU-CCGGCGgCguaucgucaUCGCCGa -3'
miRNA:   3'- cGCAGCA--AGUAuGGCUGUgG---------AGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 42725 0.66 0.863886
Target:  5'- cGCGUCGgcgaguugAUCGGCugCgagCGCCa -3'
miRNA:   3'- -CGCAGCaagua---UGGCUGugGa--GCGGc -5'
16336 5' -53.6 NC_004084.1 + 21503 0.66 0.857366
Target:  5'- uGCGUCGUaggCGUcACCGcagaACGCCUCGaggaUGg -3'
miRNA:   3'- -CGCAGCAa--GUA-UGGC----UGUGGAGCg---GC- -5'
16336 5' -53.6 NC_004084.1 + 56606 0.66 0.849009
Target:  5'- gGCGUCGUcgCcgGUCGGCGagUUCGCCGg -3'
miRNA:   3'- -CGCAGCAa-GuaUGGCUGUg-GAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 9705 0.66 0.849009
Target:  5'- cGCGgugaGUUg--GCCGACGCCgauGCCGg -3'
miRNA:   3'- -CGCag--CAAguaUGGCUGUGGag-CGGC- -5'
16336 5' -53.6 NC_004084.1 + 34847 0.66 0.849009
Target:  5'- aCGUCG-UCGUACgaGACGCaucgcuugCGCCGa -3'
miRNA:   3'- cGCAGCaAGUAUGg-CUGUGga------GCGGC- -5'
16336 5' -53.6 NC_004084.1 + 22853 0.66 0.840428
Target:  5'- aCGUCGUUguagagcugCGU-CCGGCgGCaCUCGCCGc -3'
miRNA:   3'- cGCAGCAA---------GUAuGGCUG-UG-GAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 8471 0.66 0.840428
Target:  5'- cGUGuUCGUUCuggccccACUGAcCACCUgCGCCGc -3'
miRNA:   3'- -CGC-AGCAAGua-----UGGCU-GUGGA-GCGGC- -5'
16336 5' -53.6 NC_004084.1 + 55572 0.66 0.831631
Target:  5'- uCGUCGgcCuguUCGGCAuCCUCGCCa -3'
miRNA:   3'- cGCAGCaaGuauGGCUGU-GGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 38358 0.67 0.813428
Target:  5'- gGCGUCGUcgGUAUCGACAgCaUCGaCUGa -3'
miRNA:   3'- -CGCAGCAagUAUGGCUGUgG-AGC-GGC- -5'
16336 5' -53.6 NC_004084.1 + 16790 0.67 0.813428
Target:  5'- aCGUCGaugUCccggACCGuCGCCUCGCg- -3'
miRNA:   3'- cGCAGCa--AGua--UGGCuGUGGAGCGgc -5'
16336 5' -53.6 NC_004084.1 + 40562 0.67 0.813428
Target:  5'- -aGUcCGaUUCG-ACCGACAUCUCgGCCGu -3'
miRNA:   3'- cgCA-GC-AAGUaUGGCUGUGGAG-CGGC- -5'
16336 5' -53.6 NC_004084.1 + 39414 0.67 0.813428
Target:  5'- gGCGUCG-UCGUccucACuCGAUGCUUCGuuGa -3'
miRNA:   3'- -CGCAGCaAGUA----UG-GCUGUGGAGCggC- -5'
16336 5' -53.6 NC_004084.1 + 39637 0.67 0.803092
Target:  5'- -aGUCGaUCGUACgCGACGCCgaggaacUCGCgCGc -3'
miRNA:   3'- cgCAGCaAGUAUG-GCUGUGG-------AGCG-GC- -5'
16336 5' -53.6 NC_004084.1 + 15620 0.67 0.80119
Target:  5'- aCGUCGUUC-UGacgauggaagaacuCCGGCAUCUCGgCGu -3'
miRNA:   3'- cGCAGCAAGuAU--------------GGCUGUGGAGCgGC- -5'
16336 5' -53.6 NC_004084.1 + 1788 0.67 0.800236
Target:  5'- -gGUCGUUCugagccacgauCCGGCgaaCUCGCCGa -3'
miRNA:   3'- cgCAGCAAGuau--------GGCUGug-GAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 41219 0.68 0.75466
Target:  5'- aGCGUCGacUCGaggGCUGACGacaaugugccucCCUCGCCu -3'
miRNA:   3'- -CGCAGCa-AGUa--UGGCUGU------------GGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 12215 0.68 0.744371
Target:  5'- uCGUCGacgCAU-CCGACGacgaUCUCGCCGc -3'
miRNA:   3'- cGCAGCaa-GUAuGGCUGU----GGAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.