miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16336 5' -53.6 NC_004084.1 + 14134 1.11 0.001481
Target:  5'- aGCGUCGUUCAUACCGACACCUCGCCGu -3'
miRNA:   3'- -CGCAGCAAGUAUGGCUGUGGAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 10474 0.72 0.522978
Target:  5'- aCGUCGUUCGUacaccgcucgccauuGCCcuggaucgcgcGGCACCUCGCgGa -3'
miRNA:   3'- cGCAGCAAGUA---------------UGG-----------CUGUGGAGCGgC- -5'
16336 5' -53.6 NC_004084.1 + 27978 0.72 0.487859
Target:  5'- cGCGUgCGUUCGcACCGACuuuCUUCGUCu -3'
miRNA:   3'- -CGCA-GCAAGUaUGGCUGu--GGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 51695 0.71 0.56117
Target:  5'- aCGUCGUUCccGUACCGGacggACaUCGCCGg -3'
miRNA:   3'- cGCAGCAAG--UAUGGCUg---UGgAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 56212 0.7 0.604437
Target:  5'- -aGUCGggCGUgugGCCGuGCAUCUUGCCGu -3'
miRNA:   3'- cgCAGCaaGUA---UGGC-UGUGGAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 49012 0.7 0.626244
Target:  5'- cGUGUCGaUCGUgACCGACACgaCGUCc -3'
miRNA:   3'- -CGCAGCaAGUA-UGGCUGUGgaGCGGc -5'
16336 5' -53.6 NC_004084.1 + 30570 0.69 0.658969
Target:  5'- -gGUCGUguuccuucagcUCGU-CCGugACCUCGCgGa -3'
miRNA:   3'- cgCAGCA-----------AGUAuGGCugUGGAGCGgC- -5'
16336 5' -53.6 NC_004084.1 + 10076 0.69 0.669842
Target:  5'- aGCGUUGaUCGccGCCGuACACCUUgagGCCGa -3'
miRNA:   3'- -CGCAGCaAGUa-UGGC-UGUGGAG---CGGC- -5'
16336 5' -53.6 NC_004084.1 + 17074 0.69 0.68824
Target:  5'- aGCGgUGUUCGagACCGACucccauucucacccGCgCUCGCCGg -3'
miRNA:   3'- -CGCaGCAAGUa-UGGCUG--------------UG-GAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 41219 0.68 0.75466
Target:  5'- aGCGUCGacUCGaggGCUGACGacaaugugccucCCUCGCCu -3'
miRNA:   3'- -CGCAGCa-AGUa--UGGCUGU------------GGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 12215 0.68 0.744371
Target:  5'- uCGUCGacgCAU-CCGACGacgaUCUCGCCGc -3'
miRNA:   3'- cGCAGCaa-GUAuGGCUGU----GGAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 52147 0.68 0.723469
Target:  5'- uGCGUCGUgaUCAUggacGCCGAcCACgUCGaCGa -3'
miRNA:   3'- -CGCAGCA--AGUA----UGGCU-GUGgAGCgGC- -5'
16336 5' -53.6 NC_004084.1 + 22223 0.68 0.723469
Target:  5'- cGC-UCGa--GUACCGaacGCAUCUCGCCGa -3'
miRNA:   3'- -CGcAGCaagUAUGGC---UGUGGAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 40562 0.67 0.813428
Target:  5'- -aGUcCGaUUCG-ACCGACAUCUCgGCCGu -3'
miRNA:   3'- cgCA-GC-AAGUaUGGCUGUGGAG-CGGC- -5'
16336 5' -53.6 NC_004084.1 + 16790 0.67 0.813428
Target:  5'- aCGUCGaugUCccggACCGuCGCCUCGCg- -3'
miRNA:   3'- cGCAGCa--AGua--UGGCuGUGGAGCGgc -5'
16336 5' -53.6 NC_004084.1 + 38358 0.67 0.813428
Target:  5'- gGCGUCGUcgGUAUCGACAgCaUCGaCUGa -3'
miRNA:   3'- -CGCAGCAagUAUGGCUGUgG-AGC-GGC- -5'
16336 5' -53.6 NC_004084.1 + 39637 0.67 0.803092
Target:  5'- -aGUCGaUCGUACgCGACGCCgaggaacUCGCgCGc -3'
miRNA:   3'- cgCAGCaAGUAUG-GCUGUGG-------AGCG-GC- -5'
16336 5' -53.6 NC_004084.1 + 15620 0.67 0.80119
Target:  5'- aCGUCGUUC-UGacgauggaagaacuCCGGCAUCUCGgCGu -3'
miRNA:   3'- cGCAGCAAGuAU--------------GGCUGUGGAGCgGC- -5'
16336 5' -53.6 NC_004084.1 + 1788 0.67 0.800236
Target:  5'- -gGUCGUUCugagccacgauCCGGCgaaCUCGCCGa -3'
miRNA:   3'- cgCAGCAAGuau--------GGCUGug-GAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 39414 0.67 0.813428
Target:  5'- gGCGUCG-UCGUccucACuCGAUGCUUCGuuGa -3'
miRNA:   3'- -CGCAGCaAGUA----UG-GCUGUGGAGCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.