miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16336 5' -53.6 NC_004084.1 + 39637 0.67 0.803092
Target:  5'- -aGUCGaUCGUACgCGACGCCgaggaacUCGCgCGc -3'
miRNA:   3'- cgCAGCaAGUAUG-GCUGUGG-------AGCG-GC- -5'
16336 5' -53.6 NC_004084.1 + 40562 0.67 0.813428
Target:  5'- -aGUcCGaUUCG-ACCGACAUCUCgGCCGu -3'
miRNA:   3'- cgCA-GC-AAGUaUGGCUGUGGAG-CGGC- -5'
16336 5' -53.6 NC_004084.1 + 41219 0.68 0.75466
Target:  5'- aGCGUCGacUCGaggGCUGACGacaaugugccucCCUCGCCu -3'
miRNA:   3'- -CGCAGCa-AGUa--UGGCUGU------------GGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 42725 0.66 0.863886
Target:  5'- cGCGUCGgcgaguugAUCGGCugCgagCGCCa -3'
miRNA:   3'- -CGCAGCaagua---UGGCUGugGa--GCGGc -5'
16336 5' -53.6 NC_004084.1 + 49012 0.7 0.626244
Target:  5'- cGUGUCGaUCGUgACCGACACgaCGUCc -3'
miRNA:   3'- -CGCAGCaAGUA-UGGCUGUGgaGCGGc -5'
16336 5' -53.6 NC_004084.1 + 51695 0.71 0.56117
Target:  5'- aCGUCGUUCccGUACCGGacggACaUCGCCGg -3'
miRNA:   3'- cGCAGCAAG--UAUGGCUg---UGgAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 52147 0.68 0.723469
Target:  5'- uGCGUCGUgaUCAUggacGCCGAcCACgUCGaCGa -3'
miRNA:   3'- -CGCAGCA--AGUA----UGGCU-GUGgAGCgGC- -5'
16336 5' -53.6 NC_004084.1 + 55572 0.66 0.831631
Target:  5'- uCGUCGgcCuguUCGGCAuCCUCGCCa -3'
miRNA:   3'- cGCAGCaaGuauGGCUGU-GGAGCGGc -5'
16336 5' -53.6 NC_004084.1 + 56212 0.7 0.604437
Target:  5'- -aGUCGggCGUgugGCCGuGCAUCUUGCCGu -3'
miRNA:   3'- cgCAGCaaGUA---UGGC-UGUGGAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 56606 0.66 0.849009
Target:  5'- gGCGUCGUcgCcgGUCGGCGagUUCGCCGg -3'
miRNA:   3'- -CGCAGCAa-GuaUGGCUGUg-GAGCGGC- -5'
16336 5' -53.6 NC_004084.1 + 56637 0.66 0.865492
Target:  5'- uCGUgGcUCAgaaCGAcCACCUCGCCa -3'
miRNA:   3'- cGCAgCaAGUaugGCU-GUGGAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.