Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16336 | 5' | -53.6 | NC_004084.1 | + | 17074 | 0.69 | 0.68824 |
Target: 5'- aGCGgUGUUCGagACCGACucccauucucacccGCgCUCGCCGg -3' miRNA: 3'- -CGCaGCAAGUa-UGGCUG--------------UG-GAGCGGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 22223 | 0.68 | 0.723469 |
Target: 5'- cGC-UCGa--GUACCGaacGCAUCUCGCCGa -3' miRNA: 3'- -CGcAGCaagUAUGGC---UGUGGAGCGGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 52147 | 0.68 | 0.723469 |
Target: 5'- uGCGUCGUgaUCAUggacGCCGAcCACgUCGaCGa -3' miRNA: 3'- -CGCAGCA--AGUA----UGGCU-GUGgAGCgGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 12215 | 0.68 | 0.744371 |
Target: 5'- uCGUCGacgCAU-CCGACGacgaUCUCGCCGc -3' miRNA: 3'- cGCAGCaa-GUAuGGCUGU----GGAGCGGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 1788 | 0.67 | 0.800236 |
Target: 5'- -gGUCGUUCugagccacgauCCGGCgaaCUCGCCGa -3' miRNA: 3'- cgCAGCAAGuau--------GGCUGug-GAGCGGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 15620 | 0.67 | 0.80119 |
Target: 5'- aCGUCGUUC-UGacgauggaagaacuCCGGCAUCUCGgCGu -3' miRNA: 3'- cGCAGCAAGuAU--------------GGCUGUGGAGCgGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 39637 | 0.67 | 0.803092 |
Target: 5'- -aGUCGaUCGUACgCGACGCCgaggaacUCGCgCGc -3' miRNA: 3'- cgCAGCaAGUAUG-GCUGUGG-------AGCG-GC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 55572 | 0.66 | 0.831631 |
Target: 5'- uCGUCGgcCuguUCGGCAuCCUCGCCa -3' miRNA: 3'- cGCAGCaaGuauGGCUGU-GGAGCGGc -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 34847 | 0.66 | 0.849009 |
Target: 5'- aCGUCG-UCGUACgaGACGCaucgcuugCGCCGa -3' miRNA: 3'- cGCAGCaAGUAUGg-CUGUGga------GCGGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 1726 | 0.66 | 0.865492 |
Target: 5'- gGCGgcugcUCGaUCGgugACCGAgACC-CGCCGc -3' miRNA: 3'- -CGC-----AGCaAGUa--UGGCUgUGGaGCGGC- -5' |
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16336 | 5' | -53.6 | NC_004084.1 | + | 27978 | 0.72 | 0.487859 |
Target: 5'- cGCGUgCGUUCGcACCGACuuuCUUCGUCu -3' miRNA: 3'- -CGCA-GCAAGUaUGGCUGu--GGAGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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