miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16338 3' -61.2 NC_004084.1 + 46698 0.66 0.465412
Target:  5'- aCGUCGCCGGCgacgucuaccgcgaCGaGUGGUCGGGcgagcacAUCGa -3'
miRNA:   3'- -GCAGUGGCUG--------------GCcCACCAGCCC-------UGGC- -5'
16338 3' -61.2 NC_004084.1 + 18649 0.66 0.459792
Target:  5'- uCGUCGCCGucuUCGGc--GUCGGGAUCa -3'
miRNA:   3'- -GCAGUGGCu--GGCCcacCAGCCCUGGc -5'
16338 3' -61.2 NC_004084.1 + 9500 0.66 0.450508
Target:  5'- cCGgCGCCGACCGGaagucGUGGcCGaccGACCGa -3'
miRNA:   3'- -GCaGUGGCUGGCC-----CACCaGCc--CUGGC- -5'
16338 3' -61.2 NC_004084.1 + 1786 0.67 0.441327
Target:  5'- aGUC-CCGAaguUCGGcUGGuuguUCGGGACCGu -3'
miRNA:   3'- gCAGuGGCU---GGCCcACC----AGCCCUGGC- -5'
16338 3' -61.2 NC_004084.1 + 11303 0.67 0.417965
Target:  5'- gCGUCgcaccggaugcagguGCCGACCggcGGGUuGUCGGGAUUa -3'
miRNA:   3'- -GCAG---------------UGGCUGG---CCCAcCAGCCCUGGc -5'
16338 3' -61.2 NC_004084.1 + 4641 0.68 0.380199
Target:  5'- gGUCACCGGuggaagcgguCCGGGcgGGggaaUCGGaGACCa -3'
miRNA:   3'- gCAGUGGCU----------GGCCCa-CC----AGCC-CUGGc -5'
16338 3' -61.2 NC_004084.1 + 35993 0.68 0.37194
Target:  5'- uCGUCuCCGACCGcGUcGUCGGaGCCGa -3'
miRNA:   3'- -GCAGuGGCUGGCcCAcCAGCCcUGGC- -5'
16338 3' -61.2 NC_004084.1 + 29145 0.68 0.355791
Target:  5'- uGUCGgCGguGCUGGuGUGGUCGcgcGGGCCGu -3'
miRNA:   3'- gCAGUgGC--UGGCC-CACCAGC---CCUGGC- -5'
16338 3' -61.2 NC_004084.1 + 45500 0.68 0.347904
Target:  5'- gCGUCuACCuGGCCGGGccGGUCGGccacuCCGa -3'
miRNA:   3'- -GCAG-UGG-CUGGCCCa-CCAGCCcu---GGC- -5'
16338 3' -61.2 NC_004084.1 + 23068 0.69 0.309644
Target:  5'- uCGUCGCCGGCgacgcgaCGaGGUGGacgUCGGcGACCu -3'
miRNA:   3'- -GCAGUGGCUG-------GC-CCACC---AGCC-CUGGc -5'
16338 3' -61.2 NC_004084.1 + 7148 0.7 0.263109
Target:  5'- gGUguUCGGCCgGGGUGGuUCGGGGUCGg -3'
miRNA:   3'- gCAguGGCUGG-CCCACC-AGCCCUGGC- -5'
16338 3' -61.2 NC_004084.1 + 50252 0.72 0.211143
Target:  5'- gCGUCGCUGGagCGGGcUGGUCGGcacGACCa -3'
miRNA:   3'- -GCAGUGGCUg-GCCC-ACCAGCC---CUGGc -5'
16338 3' -61.2 NC_004084.1 + 5341 0.76 0.116954
Target:  5'- aCGUCGCCGAgCGGGcGG-CGaGGACUGg -3'
miRNA:   3'- -GCAGUGGCUgGCCCaCCaGC-CCUGGC- -5'
16338 3' -61.2 NC_004084.1 + 13610 1.08 0.000494
Target:  5'- cCGUCACCGACCGGGUGGUCGGGACCGu -3'
miRNA:   3'- -GCAGUGGCUGGCCCACCAGCCCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.