Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16338 | 5' | -53.6 | NC_004084.1 | + | 13644 | 1.12 | 0.001302 |
Target: 5'- uUCCCAUCUCGACCGUCUCGUCUUCGCc -3' miRNA: 3'- -AGGGUAGAGCUGGCAGAGCAGAAGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 12747 | 0.8 | 0.17403 |
Target: 5'- aUCUCGUCgacgcCGACCGUCUCGUCguugUCGg -3' miRNA: 3'- -AGGGUAGa----GCUGGCAGAGCAGa---AGCg -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 25204 | 0.78 | 0.245181 |
Target: 5'- gCCCG-CUCGGCCGcCUCuGUCUUCGg -3' miRNA: 3'- aGGGUaGAGCUGGCaGAG-CAGAAGCg -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 50924 | 0.77 | 0.292676 |
Target: 5'- cCCCGUCggcCGACuugcuCGUCUCGcCUUCGCc -3' miRNA: 3'- aGGGUAGa--GCUG-----GCAGAGCaGAAGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 40573 | 0.74 | 0.427 |
Target: 5'- aCCgaCAUCUCGGCCGUCUCGagcucggCUUCu- -3' miRNA: 3'- aGG--GUAGAGCUGGCAGAGCa------GAAGcg -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 49136 | 0.72 | 0.53791 |
Target: 5'- aUCCAcuUCUCGACCGUCUCuGUa---GCg -3' miRNA: 3'- aGGGU--AGAGCUGGCAGAG-CAgaagCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 56811 | 0.72 | 0.496179 |
Target: 5'- -gCCAUCUuCGACCG-CUUGUCUgccaaccagCGCg -3' miRNA: 3'- agGGUAGA-GCUGGCaGAGCAGAa--------GCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 14875 | 0.71 | 0.569981 |
Target: 5'- gCCgGUCUCGguGCCGUgcUUCGUCagCGCg -3' miRNA: 3'- aGGgUAGAGC--UGGCA--GAGCAGaaGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 1432 | 0.7 | 0.6134 |
Target: 5'- gUCgCCGUcCUCGGCCGcCUC--CUUCGCu -3' miRNA: 3'- -AG-GGUA-GAGCUGGCaGAGcaGAAGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 50503 | 0.7 | 0.646161 |
Target: 5'- aUCCgCGUCUucuucgcgcCGACUGUCUCGguUCggaUCGCg -3' miRNA: 3'- -AGG-GUAGA---------GCUGGCAGAGC--AGa--AGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 47851 | 0.7 | 0.606857 |
Target: 5'- gUCCCGUCUCGAUCGacagccaccccgagcUaCUCGUC--CGCu -3' miRNA: 3'- -AGGGUAGAGCUGGC---------------A-GAGCAGaaGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 6538 | 0.7 | 0.646161 |
Target: 5'- gUCCCAgaUCUCGACCGg--CGUCcgguagUUCGa -3' miRNA: 3'- -AGGGU--AGAGCUGGCagaGCAG------AAGCg -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 26185 | 0.69 | 0.689616 |
Target: 5'- gUCCCAa--CGACCGUCggCGUCgUCGa -3' miRNA: 3'- -AGGGUagaGCUGGCAGa-GCAGaAGCg -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 7266 | 0.69 | 0.71106 |
Target: 5'- -aCCGUCUCGAUCGccucCUCGUUcgggaUCGCc -3' miRNA: 3'- agGGUAGAGCUGGCa---GAGCAGa----AGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 26996 | 0.69 | 0.678807 |
Target: 5'- aUCCAUCgCGGCCGcgUCGUCUgcgacuUCGCc -3' miRNA: 3'- aGGGUAGaGCUGGCagAGCAGA------AGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 52731 | 0.69 | 0.700371 |
Target: 5'- -aCCAUCgUCGAguaucuucaCCGUCUCGUCgacggUgGCu -3' miRNA: 3'- agGGUAG-AGCU---------GGCAGAGCAGa----AgCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 35976 | 0.69 | 0.700371 |
Target: 5'- gUCCCGaCUCGAUCaG-CUCGUCUccgacCGCg -3' miRNA: 3'- -AGGGUaGAGCUGG-CaGAGCAGAa----GCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 33742 | 0.69 | 0.700371 |
Target: 5'- aUUUCGg--CGACCGUUUCcUCUUCGCu -3' miRNA: 3'- -AGGGUagaGCUGGCAGAGcAGAAGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 35612 | 0.69 | 0.689616 |
Target: 5'- gCCCgAUCUCcACaGUCagGUCUUCGCu -3' miRNA: 3'- aGGG-UAGAGcUGgCAGagCAGAAGCG- -5' |
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16338 | 5' | -53.6 | NC_004084.1 | + | 45921 | 0.68 | 0.731149 |
Target: 5'- --gCAUCUCGGCCGUguagaccUUCGUcCUUCGg -3' miRNA: 3'- aggGUAGAGCUGGCA-------GAGCA-GAAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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